PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000112G0590

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WOX

Protein Properties

Length: 272aa MW: 30498.9 Da PI: 6.001

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000112G0590	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.9e-21	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++ +l +++e++V++WFqNrRa+ k+ PH01000112G0590 93 RQRWTPTQMQLQILENIFDQgNGTPSKQKIKEITVELsqhgQISETNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	101.2	7.3e-33	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq PH01000112G0590 92 ARQRWTPTQMQLQILENIFDQGNGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 155 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-19	88	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.835	89	154	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-17	90	158	IPR009057	Homeodomain-like
SMART	SM00389	3.1E-14	91	158	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-19	93	153	IPR001356	Homeobox domain
CDD	cd00086	4.70E-14	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEWDNAKASS AATGESADER GGGEGLGYVK VMTDEQMEVL RKQISIYATI CEQLVEMHRA 60 LTAHQDSIAG MRLGNLYCDP LMVAGGHKIT TARQRWTPTQ MQLQILENIF DQGNGTPSKQ 120 KIKEITVELS QHGQISETNV YNWFQNRRAR SKRKQAASLP NNAESEAEAD EESPTDKKPK 180 SDRPLHQNMA VRDHNSERIS EMHHFDTEHE QIRGMMYGSN ENSSRSSGSL GQMSFYENIM 240 SNPRLDQFLG KVESPGSFSH LRPGESFDMF G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000112G0590

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ713172	0.0	KJ713172.1 Stipa purpurea WOX13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644908.1	1e-155	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-155	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	J3L597	1e-154	J3L597_ORYBR; Uncharacterized protein
STRING	OB01G44030.1	1e-155	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-61	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]