PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000112G1110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 344aa    MW: 38421.7 Da    PI: 8.8425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000112G1110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.34.9e-21149211259
                      --SS-EEEEEEE--TT.-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkg.sefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+++    fpr YYrCt++   gCp+ k++e+  +edp ++ ++Y++eH+++
  PH01000112G1110 149 HDGYEWRKYGQKMIRAmHAFPRCYYRCTYHqghGCPASKHMEQHnSEDPPLFRVIYTNEHTCS 211
                      7*************973579*********99999*******9752689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-21136212IPR003657WRKY domain
SuperFamilySSF1182901.44E-18143211IPR003657WRKY domain
SMARTSM007741.7E-29148212IPR003657WRKY domain
PfamPF031062.8E-21150210IPR003657WRKY domain
PROSITE profilePS5081115.996150213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRFPAALDKC KENRTRHLQF RPAKGSAPTA GNPPDAPQLQ GILPAPTRVI VHRLQDVTRG  60
HHMARRADNM VSSGGCSKGT HKRLLQDSSG YAQEHANKLN SCQIYELPFI SWTFMRKLMH  120
ICLKCLIVIS SNRKVRIGTG TEYTYAPYHD GYEWRKYGQK MIRAMHAFPR CYYRCTYHQG  180
HGCPASKHME QHNSEDPPLF RVIYTNEHTC SSTAASDYMA SSMHIQRIAD ASLRKVEMER  240
PPRLQTHCSG GYTTVIKEEK GAIVSSLLTV ITGCDVAKSD AVHENTAALS TVARSSDDGT  300
SSLISPVLLP ASDDLKMDFM NGSMVSHWFE TLDLGWFKES NAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000112G1110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642042.12e-99probable WRKY transcription factor 64
TrEMBLA0A0E0JQD11e-100A0A0E0JQD1_ORYPU; Uncharacterized protein
STRINGOPUNC01G34260.11e-100(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-16WRKY DNA-binding protein 38