PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000112G1290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 280aa    MW: 30199.6 Da    PI: 5.1907
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000112G1290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.94.6e-091041551359
                      E--TT-SS-EE.EEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
             WRKY  13 Kevkgsefprs.YYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                      +  ++ ++pr+ YY+C+++   +Cp++k+v++ s+ dp + +++Y  +H+++
  PH01000112G1290 104 RRARDDNVPRKcYYKCSYHrerNCPATKQVQQhSNGDPPLYDVIYVHDHTCH 155
                      566778888855******9999********9725679************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-9106155IPR003657WRKY domain
SuperFamilySSF1182906.28E-9106156IPR003657WRKY domain
SMARTSM007743.4E-7107156IPR003657WRKY domain
PfamPF031066.5E-11112155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQAQSRLSVS GDSSFDSADE HKAVVKELTR VVKELTRGQE LTARLQAEAL RALRGQGQAE  60
VTAEFILREV SRAFTVCLSI MAGSSPAGTP RPDTPKSSVS VGARRARDDN VPRKCYYKCS  120
YHRERNCPAT KQVQQHSNGD PPLYDVIYVH DHTCHTSASE PEPANGAMNP LDFSGLSRQG  180
LHVLDGGAME EHERQALVSS LACVLQGQYS GRGGVGVPES SLHRTGDASA SATSVDASEL  240
PRLDIDEGLD VMDYDVADTM CFEGASSMPY IDRVNFEIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000112G1290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638612e-40BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564872e-40EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699482e-40JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147760.17e-62WRKY DNA binding domain containing protein
TrEMBLA0A3L6FPV31e-61A0A3L6FPV3_MAIZE; Putative WRKY transcription factor 38
TrEMBLA0A3L6R2X71e-61A0A3L6R2X7_PANMI; Putative WRKY transcription factor 4
STRINGGRMZM2G158328_P013e-61(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.12e-08ABA overly sensitive mutant 3