PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000115G0880

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 238aa MW: 26865.9 Da PI: 9.627

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000115G0880	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52	1.3e-16	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp++f+e++ +k+ +tl de+ ++++ ++ ++++ l++GW +F+ +gL++gD vF+l++ + f +v PH01000115G0880 137 FVKPMLHSHVVRGFWLGLPRHFCETYL-PKHD-SIVTLVDEKDEEFKTNY--LAYKNG--LSGGWAGFALCHGLQDGDATVFELIKPTAF--KV 222 89*********************94.3334.38***********..566555..9**********************97888..99 PP EEE-S CS B3 95 kvfrk 99 +++r+ PH01000115G0880 223 HIIRA 227 99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-20	128	228	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-24	130	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.57E-26	135	226	No hit	No description
PROSITE profile	PS50863	11.66	137	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.1E-15	137	227	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-18	137	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAIEKGMSAY EAARERTVEE NKRKMEALNL RHLTAAVTEA PKTPSPMKQK RRRIVEAAVV 60 APSPRRRSRR LANLPEVKYA EVVPDKERVK RSPRKLYESI YLASKKSCGS ISMEARLEAA 120 RKAEELESQL NPEYPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDSIV TLVDEKDEEF 180 KTNYLAYKNG LSGGWAGFAL CHGLQDGDAT VFELIKPTAF KVHIIRATVD DGNEVTE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	53	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000115G0880

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633231.1	1e-150	B3 domain-containing protein Os03g0184500
Swissprot	Q10QS9	1e-151	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A0D3FEQ2	1e-149	A0A0D3FEQ2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9Z328	1e-149	A0A0D9Z328_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0G2D5	1e-149	A0A0E0G2D5_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NQP1	1e-149	A0A0E0NQP1_ORYRU; Uncharacterized protein
TrEMBL	I1P8A4	1e-149	I1P8A4_ORYGL; Uncharacterized protein
STRING	OGLUM03G06210.1	1e-150	(Oryza glumipatula)
STRING	ORUFI03G06050.1	1e-150	(Oryza rufipogon)
STRING	OS03T0184500-01	1e-150	(Oryza sativa)
STRING	ONIVA02G06710.1	1e-150	(Oryza nivara)
STRING	ORGLA03G0060000.1	1e-150	(Oryza glaberrima)
STRING	OBART03G06210.1	1e-150	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]