PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000117G0520

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 255aa MW: 27885.8 Da PI: 10.4918

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000117G0520	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.9	6.1e-34	18	161	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk.......rknr.atksgyWk. 84 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+ev d+yk++Pwd+p a+e e yfF+ r + a g r +r +t+sg Wk PH01000117G0520 18 LPPGFRFHPTDEELVVQYLRRKALGFPLPA-AVIPEVhDLYKLDPWDIP---GASEGEKYFFAVRPAAGAGGGtklrgsgRCRRpTTASGCWKp 107 79**************************.8999999*******...3456799**99998554344444577777799*6 PP NAM 85 atgkdkevlsk...kgelvglkktLvfy....kgrapkge...ktdWvmheyrl 128 a g++k+v+++ +++lvg+k+++vf k+rap+++ +tdWvmheyrl PH01000117G0520 108 AGGREKPVVASrcgGNHLVGVKRSMVFVlrgrKARAPRASpvgQTDWVMHEYRL 161 667899999988988899******9776556666556679******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-42	15	188	IPR003441	NAC domain
PROSITE profile	PS51005	43.651	18	188	IPR003441	NAC domain
Pfam	PF02365	1.4E-21	19	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MERAPVLVRH GELVLRQLPP GFRFHPTDEE LVVQYLRRKA LGFPLPAAVI PEVHDLYKLD 60 PWDIPGASEG EKYFFAVRPA AGAGGGTKLR GSGRCRRPTT ASGCWKPAGG REKPVVASRC 120 GGNHLVGVKR SMVFVLRGRK ARAPRASPVG QTDWVMHEYR LTLPPHKNGC LAQAKESEEW 180 VVCRIFQRNR PSRRPDHDER RVPGGHATVA QPTMIPPSLS ASSSSSCVTS SSDQEEVSSG 240 RKQDAAEAAA SKREA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	13	194	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	13	194	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	13	194	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	13	194	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	13	194	15	174	NAC domain-containing protein 19
3swm_B	2e-32	13	194	15	174	NAC domain-containing protein 19
3swm_C	2e-32	13	194	15	174	NAC domain-containing protein 19
3swm_D	2e-32	13	194	15	174	NAC domain-containing protein 19
3swp_A	2e-32	13	194	15	174	NAC domain-containing protein 19
3swp_B	2e-32	13	194	15	174	NAC domain-containing protein 19
3swp_C	2e-32	13	194	15	174	NAC domain-containing protein 19
3swp_D	2e-32	13	194	15	174	NAC domain-containing protein 19
4dul_A	2e-32	13	194	12	171	NAC domain-containing protein 19
4dul_B	2e-32	13	194	12	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000117G0520

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092533	0.0	FP092533.1 Phyllostachys edulis cDNA clone: bphyem116i07, full insert sequence.
GenBank	FP100669	0.0	FP100669.1 Phyllostachys edulis cDNA clone: bphyem206k13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151744.1	6e-87	NAC domain-containing protein 83-like
TrEMBL	A0A1D6D493	1e-85	A0A1D6D493_WHEAT; NAC domain-containing protein 18
TrEMBL	A0A3B6RII0	1e-85	A0A3B6RII0_WHEAT; Uncharacterized protein
TrEMBL	A0A446XDS2	1e-85	A0A446XDS2_TRITD; Uncharacterized protein
TrEMBL	A0A453RMY8	1e-85	A0A453RMY8_AEGTS; Uncharacterized protein
STRING	EMT32999	1e-83	(Aegilops tauschii)
STRING	OB08G28540.1	6e-84	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11818	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-44	NAC domain containing protein 83