PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000120G1730

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 294aa MW: 31378.3 Da PI: 6.9641

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000120G1730	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.4e-09	121	168	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN +++ L+el+P +s k a +L + +++++sLq PH01000120G1730 121 SHSLAERARREKINARMDLLKELVPGCS----KVSGTALVLDEIINHVQSLQ 168 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.73E-10	115	172	No hit	No description
SuperFamily	SSF47459	2.49E-15	115	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-14	117	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.596	117	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	121	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-8	123	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MHRPTSPEPR GGSFRALLGL PTTQAMELLL PVAPTFPSDP GLVDRAARFS AFAASSSSSP 60 PPPAAKRKDP GDRTTNKVGK AAKKGRVEAG SAAGGGEDAE EEEEKPAYVH VRARRGQATD 120 SHSLAERARR EKINARMDLL KELVPGCSKV SGTALVLDEI INHVQSLQRQ VEYLSMRLAT 180 VNPTVDFGGL DSLLATECGR STTGLNSKNV MDLEPATWPE LGIYGARQLA QLQQQFWHGS 240 VTHPHQLALM SDKRDDDHPP VLASSGASLF GYDLASSGPP LQFIALSIEL SNN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000120G1730

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	1e-115	uncharacterized protein LOC100273300
Refseq	XP_020394963.1	1e-115	transcription factor bHLH48 isoform X1
Swissprot	Q8VZ02	2e-59	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1D6LRB4	1e-114	A0A1D6LRB4_MAIZE; Putative HLH DNA-binding domain superfamily protein
TrEMBL	A0A3L6E894	1e-114	A0A3L6E894_MAIZE; Transcription factor bHLH48
STRING	GRMZM2G378653_P02	1e-119	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	3e-50	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]