PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000121G1380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 340aa    MW: 36899.1 Da    PI: 7.1367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000121G1380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32200257259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  PH01000121G1380 200 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 257
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-34184259IPR003657WRKY domain
SuperFamilySSF1182906.67E-29192259IPR003657WRKY domain
PROSITE profilePS5081131.066194259IPR003657WRKY domain
SMARTSM007741.6E-37199258IPR003657WRKY domain
PfamPF031061.9E-25200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSSGGGGRGG GDRHGLYHQH GHSHLARADG ADYVFSSNDM ESFFFNQPAG VGGGGAGGAD  60
EIMPYSSITD YLQGFLDPTG LARHLDVPCS AQDALVKHEL SVDVMSHDSQ GTGGAAGEGV  120
ALVTPNSSVS FSSSDGEGEG KSRRCKKGRA KAEEEVEEDE KDQEDAENSK KPNKPKKKAE  180
KRQQQPRVAF LTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTPKC GVKKRVERSY  240
QDPSTVITTY EGQHTHHSPA SLRAGGAHLF MPNVHALPPH LMPGGFRQDL MSMMHPMGAN  300
PNMYLPSIPP PMPAPPLQQH LTDYALLQDL FPSTMPNNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-291922601078Probable WRKY transcription factor 4
2lex_A2e-291922601078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000121G1380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7262300.0KU726230.1 Phyllostachys edulis WAKY 11-2 protein (WRKY11-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969225.11e-170probable WRKY transcription factor 71
TrEMBLA0A140F5841e-178A0A140F584_9POAL; WAKY 11-2 protein
STRINGSi002019m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-47WRKY DNA-binding protein 71