PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000128G0650
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 292aa    MW: 31382.2 Da    PI: 8.8482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000128G0650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.7e-12157181327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +lC+f+a+t  Ck+G++CkF+H++
  PH01000128G0650 157 KPLCSFYAKTAKCKFGAKCKFNHPK 181
                      69*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF506302.17E-189117IPR021109Aspartic peptidase domain
Gene3DG3DSA:2.40.70.105.1E-1672141IPR021109Aspartic peptidase domain
PfamPF000263.9E-1580122IPR033121Peptidase family A1 domain
PROSITE profilePS5176713.48981291IPR033121Peptidase family A1 domain
PRINTSPR007922.3E-687107IPR001461Aspartic peptidase A1 family
PROSITE patternPS00141096107IPR001969Aspartic peptidase, active site
PROSITE profilePS5010315.112154182IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-4154181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5155182IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9157181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5159180IPR000571Zinc finger, CCCH-type
PRINTSPR007922.3E-6261274IPR001461Aspartic peptidase A1 family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGTRSVALVL LTAVLLQTLL PASAVEGLVR VALKKQPIDE NSHVATRLSS EEEQRFRGAN  60
SLGAGGVRDI IALKNYMNAQ YSGEIGICTP AQKFTVIFDT GSSNLWVPSS KCYFSVHPCF  120
LPLLLATSTR TTSRGNQTLI TESLIADGSI LPVRPSKPLC SFYAKTAKCK FGAKCKFNHP  180
KDMEVPSSGK ESKNTAAVEA AGHNGAADDL VSAEMFAPVA ATAQEHNSKG LPIRPGEINC  240
PFYMKTGRYP LGLFSSRTLL FSVDFGGISD LTFPSVLLQL QVWFYMPIQP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qdm_A3e-33291361108PROPHYTEPSIN
1qdm_B3e-33291361108PROPHYTEPSIN
1qdm_C3e-33291361108PROPHYTEPSIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000128G0650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209862e-72AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149612e-72AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-72CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankRICAP2e-72D32165.1 Oryza sativa gene for aspartic protease, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-23floral homeotic protein (HUA1)