PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000129G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 986aa    MW: 110499 Da    PI: 5.9902
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000129G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.81.1e-54191362118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E he+LK g+++vl+cyYah+een +f
  PH01000129G0670  19 LKEaQHRWLRPTEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEGHERLKSGSIDVLHCYYAHGEENINF 112
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhylevk
  PH01000129G0670 113 QRRSYWMLEEDFMHIVLVHYLEVK 136
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.92915141IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038593.0E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.3E-4406492IPR013783Immunoglobulin-like fold
PfamPF018335.7E-4407484IPR002909IPT domain
SuperFamilySSF812965.0E-17407492IPR014756Immunoglobulin E-set
SuperFamilySSF484035.13E-17588693IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-17591699IPR020683Ankyrin repeat-containing domain
CDDcd002041.63E-13595689No hitNo description
PROSITE profilePS500888.79597629IPR002110Ankyrin repeat
PROSITE profilePS5029717.9597701IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736630662IPR002110Ankyrin repeat
SMARTSM002480.013630659IPR002110Ankyrin repeat
SMARTSM002481200669698IPR002110Ankyrin repeat
SuperFamilySSF525402.55E-8802854IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075803825IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407804833IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032805824IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578827851IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4829848IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQHRWLRPT EICEILKNYR NFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEGHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDFMHIVLV HYLEVKVGKS SSRSRVHDDM LQATHVDSPF SQLPSQTTEA ESSLSGQASE  180
YEETESGYHQ GLQATTLNTD FHSHSQDNLP VVLMESAPGI AFNGPNSQFD LSSRNEVMKL  240
DKGIHQMPPY QAPVPSEQSP FTEGPGIESF TFDEVYNNGP SIKDIGGAGT DGEPLWQLPS  300
VIGGPFATVD SFQQNDRSLE EAINYPLLKT QSSNLSDILR DSFKKSDSFT RWMSKELAEV  360
DDSQIKSSSG VYWNSEEADN IIEASSHDQL DQFTLGPVLA QDQLFSIVDF SPSWAYAGSK  420
TKVLVFGRFI KSDEVKRFKW SCMFGEVEVP AEILANGTLR CYSPSHEPGR VPFYVTCSNR  480
LACSEVREFE FRPSPHGATN KTYLQMRLDK LLSLGQDECQ VTLSNPTKEM VDLSKKISLL  540
MMNNDTWSEL LKLADGNELA TDDTDQFLEN CIKEKMHIWL LHRVGDGGKG PGVLDEEGQG  600
VLHLAAALGY DWAIRPTITA GVNINFRDAH GWTALHWAAF CGRERTVVAL IALGAAPGAL  660
TDPTPDFPLG RTPADLASAN GHKGISGFLA ESSLTSHVQT LNLKEAMWGN AAEISGLPGI  720
GDVTERSVSP LAGEGLQAGS MGDSLGAVQN ATQAAARIYQ VFRVQSFQRK QAVQYEDDNG  780
AISDERALSL LSVKPSKPGQ LDPLHAAATR IQNKFRGWKG RKEFLLIRQR IVKIQAHVRG  840
HQVRKHYRKI IWSVGIVEKV ILRWRRRGAG LRGFRSAEGA TESTNSSSSD VIQNKPAEDD  900
YDFLQEGRKQ TEERLQKALA RVKSMVQYPD ARDQYQRILT VVTKMQESQA MQEKMLEEST  960
DMDEGFLTSE FRELWDDDMP MPGYF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000129G0670
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631249.10.0calmodulin-binding transcription activator 1 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0E0CWH50.0A0A0E0CWH5_9ORYZ; Uncharacterized protein
STRINGSi034076m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]