PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000130G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 341aa    MW: 36540.5 Da    PI: 5.2557
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000130G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.92.7e-20142207359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 
                      Dgy+WrKYGqK+++ +++prsYYrC  +   gCp+k+ v+r+++d++        +++Y  eH+++
  PH01000130G0430 142 DGYQWRKYGQKQIECAKYPRSYYRCINStdqGCPAKRTVQRDDDDTNgdggppKYTVVYIAEHTCK 207
                      9************************555456************99763333336889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-22125208IPR003657WRKY domain
SuperFamilySSF1182901.44E-19135207IPR003657WRKY domain
SMARTSM007745.7E-27140208IPR003657WRKY domain
PROSITE profilePS5081118.705142186IPR003657WRKY domain
PfamPF031063.4E-22142207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQRSCIRRAA GEHGAAVEGM LGQEQELVAQ LRELLLPSPT PTPSGDGSSW SSGLVAELFG  60
SIDGCSVKAL PGLRGACSHA SAMAEAPVSG GRRRRRGTKR ARDEEHDELG GGANAKPRCG  120
NKTRRRNKEE TKALVTTVPD FDGYQWRKYG QKQIECAKYP RSYYRCINST DQGCPAKRTV  180
QRDDDDTNGD GGPPKYTVVY IAEHTCKTVG SVAPVILETT VRTTKPAADN NAAAHVLVLT  240
PGDVVAPADS TTIGSSSTTT GTESPAISSD ITWSSDANSS EQDYCYSHVD WLFAVDDWDP  300
TTSVAAPLLQ EIDFTGPIRS PVHIAADGWI DELLVNEPIY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-161422071069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000130G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196414.12e-64WRKY transcription factor 22-like
TrEMBLA0A0A9HC422e-88A0A0A9HC42_ARUDO; Uncharacterized protein
STRINGTraes_5BL_175E7FC38.12e-69(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-17WRKY DNA-binding protein 70