PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000130G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 350aa    MW: 38718.6 Da    PI: 9.8919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000130G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.3e-2140101259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++  tY ++H+++
  PH01000130G0620  40 DDGHQWRKYGEKKLCNSNFPRFYYRCTYKndlKCPATKQVQQKdTNDPPLFSATYFNHHTCN 101
                      8***************************99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2225102IPR003657WRKY domain
SuperFamilySSF1182903.27E-2132101IPR003657WRKY domain
PROSITE profilePS5081115.30734103IPR003657WRKY domain
SMARTSM007743.7E-3139102IPR003657WRKY domain
PfamPF031062.8E-2340100IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MASLDSVPSY PSDSNRATRT QQRTRKDVRT WTTETYAPYD DGHQWRKYGE KKLCNSNFPR  60
FYYRCTYKND LKCPATKQVQ QKDTNDPPLF SATYFNHHTC NSISSSRAIG SRPDTPAQSS  120
SRKAVSICFN SRTTSEQPTF LTSSTTLQSP SIQSYRADQQ PDSSTSCTRQ FQWADASSST  180
SNALVKMEVD DFAETSATTG ALSRTLVPIA LHALARKRGK NEVRTTKRLG IGSEKEPEAR  240
EKSGTGDEEL GIGGWRQRGR GRLVWWWSTG SERAAHVVVE ERGMAQAGEQ RAMRHAGSGG  300
GGWFTASTGR SLQGSHLAHA DADAVAREWN RKPERGRSGL RWDGDDGMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1340100968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000130G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616443.12e-98probable WRKY transcription factor 70 isoform X2
TrEMBLA0A0D9XWA02e-97A0A0D9XWA0_9ORYZ; Uncharacterized protein
STRINGOMERI11G01510.11e-101(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-19WRKY DNA-binding protein 46