PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000131G1230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 209aa    MW: 22909.3 Da    PI: 4.8725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000131G1230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-183890155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++ + grWv+e+r+p   g +  r +lg+f tae+Aa+a++aa+ +l g
  PH01000131G1230 38 PVYRGVRRRGRVGRWVCEVRVP---GrRGSRLWLGTFATAEMAARAHDAAAIALSG 90
                     68*******************9...6455**********************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-133890IPR001471AP2/ERF domain
PROSITE profilePS5103221.8123998IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2939100IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1939100IPR016177DNA-binding domain
SMARTSM003803.3E-2239104IPR001471AP2/ERF domain
PRINTSPR003673.1E-54051IPR001471AP2/ERF domain
PRINTSPR003673.1E-56480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDTDATSPLS EEREYRTVWS EPPKRPAGRT KFRETRHPVY RGVRRRGRVG RWVCEVRVPG  60
RRGSRLWLGT FATAEMAARA HDAAAIALSG RAACLNFADS AWRLPVLPAS SLATAQEVKR  120
AVSEAVEAFR RDSVASTEPD EKDDDGSPGA PSESSDVFEF DDGFRFGDMD AGSYYASLAQ  180
GLLVDPPAAG AWWEDGEYGG WETALWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1237971271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000131G1230
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0287801e-96EF028780.1 Triticum aestivum CBFIVd-4.1 mRNA, complete cds.
GenBankJF7292381e-96JF729238.1 Triticum aestivum clone 1740-J17 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802908.12e-82dehydration-responsive element-binding protein 1B-like
SwissprotQ3T5N46e-71DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B
TrEMBLA0A0E0M3J92e-82A0A0E0M3J9_ORYPU; Uncharacterized protein
STRINGOPUNC09G15260.13e-83(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-19C-repeat-binding factor 4