PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000134G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 649aa    MW: 71880.1 Da    PI: 6.0259
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000134G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-094074441954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  PH01000134G0410 407 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 444
                      665559******************************88 PP
2BELL119.41.7e-38270341172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eV+++Yk+y++q+qtv+ssF++vag gs+kpYt++Al++iSrhFrcLkdai +qi
  PH01000134G0410 270 EKQELQNKMAKLMAMLDEVERKYKHYYHQMQTVVSSFDVVAGPGSSKPYTAVALQTISRHFRCLKDAINDQI 341
                      689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-55194339IPR006563POX domain
PfamPF075263.4E-50200337IPR006563POX domain
PROSITE profilePS5007112.325385448IPR001356Homeobox domain
SMARTSM003893.6E-9388452IPR001356Homeobox domain
CDDcd000863.53E-12388449No hitNo description
SuperFamilySSF466892.87E-17389454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28391454IPR009057Homeodomain-like
PfamPF059201.0E-17405444IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQNVYSR DPGSASYPMP SALGNLLYLN NPSSGPYTEF SGILQPQQNC  60
MEMPGPGHPS AMSQDSSARE SDMLASHQGQ RSFDPVKDMK NEMLMHMMDG TQSGGAELMH  120
GDSHNGAQLE FGVLNNHSSS NVLSVQGRGL SLSLNTQILA PSLPYWSIKP DMLTPHAYHD  180
SLRVDDIRMK SMQSEASRAI RNSRYLKVAQ ELLDEVVNVW KSIKQKAQKE QAEAGKADGK  240
ETDGGPKSEG VSSNPQESGA NAAPELSTAE KQELQNKMAK LMAMLDEVER KYKHYYHQMQ  300
TVVSSFDVVA GPGSSKPYTA VALQTISRHF RCLKDAINDQ INVIRKKLGE EENSSGKEGK  360
LTRLRYIDQQ LRQQRAFQQY GMIPQNAWRP QRGLPENSVT ILRAWLFEHF LHPYPKDSEK  420
LMLARQTGLT RSQISNWFIN ARVRLWKPMI EDMYKEEIGD LEQDSNSSSD NVPRSKDKVG  480
SSEEKEDLKS ARTRVCETSQ LSESRASIGT MNVSGAPVGF QNEANPDDSF MSLMMKDQRS  540
GEADGGLLLH NAAAQHSDEN ARFMAYHLAE FERYGNGNVS LTLGLQHSGS SLSVPNAQAN  600
FAGVSDDDIY NATAPLGVGV ASSDYESMNQ MDQRPRFEHS PLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16394451158Homeobox protein Meis1
4xrs_B3e-16394451158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000134G0410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664239.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_006664240.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLJ3NFA90.0J3NFA9_ORYBR; Uncharacterized protein
STRINGOB12G26670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-109BEL1-like homeodomain 6