PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000139G0610
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 597aa    MW: 63637.1 Da    PI: 7.891
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000139G0610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-103664031954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  PH01000139G0610 366 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 403
                      554459******************************88 PP
2BELL95.64.5e-31234303372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q kk++L+s++eeV+krY+qy++q+qtvi+sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  PH01000139G0610 234 AEQQWKKTRLISMMEEVCKRYRQYYQQVQTVIASFETVAGFSNAAPFAAMALRAMAKHFKCLKGMILNQL 303
                      5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-40161301IPR006563POX domain
PfamPF075262.0E-38166299IPR006563POX domain
PROSITE profilePS5007112.228344407IPR001356Homeobox domain
SMARTSM003897.4E-11347411IPR001356Homeobox domain
CDDcd000862.06E-13347408No hitNo description
SuperFamilySSF466895.13E-17349415IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28350411IPR009057Homeodomain-like
PfamPF059206.3E-19364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MSSAAGGYGG GAGSGAEPHG HGHAHGHLLL QHHAQHVAGA AAGGQLYHVP QHSRREKLRF  60
PPDAADSAPQ PPAPQQHPGA WPPQLAFYSY ASSSSSYSPH SPTLAQAQAQ LVAHGLAAPL  120
PQIPTQNFAL SLSSASSDPP PPPRRQLGGT APATGPYGPF TGYAAVLGRS RFLGPAQKLL  180
EEICDVGGAA AHVDRSVPEE GLLNADPMDG SDAVDHELNA ADRATADDGP ISGAEQQWKK  240
TRLISMMEEV CKRYRQYYQQ VQTVIASFET VAGFSNAAPF AAMALRAMAK HFKCLKGMIL  300
NQLRNTSKIA VKDGLNKDIA MFGLAGGSAG LQRGNNVSAF GQPHNIWRPQ RGLPERAVSV  360
LRAWLFEHFL HPYPTDGDKQ MLAKQTGLTR NQVSNWFINA RVRLWKPMVE EIHNLETRQM  420
HKHSAIDKSQ HGMHHQVQHS SQCSGKPSDP SDSLAGQSSS ITRNHNTPAS QSCFHTPTSQ  480
SFPDELSQMS HSIPGHVSFA YDGLSTQHSI GSSQHQQVGG VGVGGVGNGG VSLTLGLHQN  540
NRVCIAEPLP ASLPPNLAHR FGLEDVSDAY VMGSFGGQDR HFAKEIGGHL LHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17353410158Homeobox protein Meis1
4xrs_B7e-17353410158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000139G0610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688150.10.0PREDICTED: BEL1-like homeodomain protein 9, partial
TrEMBLJ3L5U30.0J3L5U3_ORYBR; Uncharacterized protein
STRINGOB01G45990.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.15e-59BEL1-like homeodomain 8