PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000140G0830

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 241aa MW: 25219.7 Da PI: 7.8133

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000140G0830	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PH01000140G0830 50 YECKTCNKCFPTFQALGGHRASH 72 99**********99999998887 PP
2	zf-C2H2	12.3	0.0005	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H PH01000140G0830 143 HECSICGAEFASGQALGGHMRRH 165 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.0E-12	49	74	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.47E-9	49	72	No hit	No description
SMART	SM00355	0.094	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	50	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.47E-9	138	165	No hit	No description
Pfam	PF13912	9.3E-13	142	166	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	143	165	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.699	143	170	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	145	165	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAHCLILLAQ GSAVDSKPSP APAPTERYTS RKYTEAATTA DGVRAGFYVY ECKTCNKCFP 60 TFQALGGHRA SHRKPRLAGS DEENANASTV TIAKSKPPMT TASPPPPPPQ VDAAIAPAPV 120 DVTTVLSLNN GAGSISKLNL RVHECSICGA EFASGQALGG HMRRHRPLHP LERAVTAITT 180 DKKKDGSTSI NLELDLNLPA PSDEESVSLP PPVVLGLGQF DDGKKGLMLT ASAALVDCHY 240 *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000140G0830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003989	5e-69	AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBank	AP004026	5e-69	AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBank	AP014958	5e-69	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	5e-69	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822199.1	3e-99	zinc finger protein ZAT5-like
TrEMBL	A0A0A9HRL3	1e-106	A0A0A9HRL3_ARUDO; Uncharacterized protein
STRING	Traes_6DL_88DFCF552.1	2e-98	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-42	C2H2 family protein