PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000141G1520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 256aa    MW: 26451.8 Da    PI: 8.1217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000141G1520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.8e-4336134199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v+vi+ lq++l+ql+++l
  PH01000141G1520  36 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAVISILQRNLRQLQQDL 129
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      a++k 
  PH01000141G1520 130 ARAKY 134
                      99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.37935136IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4236132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASSSASSVP APSGSVITIA SSSSAANSAV CGTGSPCAAC KFLRRKCQPD CVFAPYFPPD  60
NPQKFVHVHR VFGASNVTKL LNELHPYQRE DAVNSLAYEA DMRLRDPVYG CVAVISILQR  120
NLRQLQQDLA RAKYELSKFQ AAATGPNGTQ AMAEFIGHAV PNSAQSFINV GHSVALGSIG  180
GAASFGQEQF AAVQMLSRSY EGEPIARLGV NGGYEFGYST AMAGAGPVSG LGTLGGSPFL  240
KSGIAGSDER PGAGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-53321457120LOB family transfactor Ramosa2.1
5ly0_B2e-53321457120LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000141G1520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7955600.0AY795560.1 Triticum aestivum AS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817833.11e-150LOB domain-containing protein 6
RefseqXP_025817835.11e-150LOB domain-containing protein 6
SwissprotQ32SG31e-143LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A2T7DDD61e-149A0A2T7DDD6_9POAL; Uncharacterized protein
TrEMBLA0A3L6RGB01e-149A0A3L6RGB0_PANMI; LOB domain-containing protein 6
STRINGPavir.Ea03589.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-56LBD family protein