PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000142G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 394aa    MW: 43019.7 Da    PI: 8.3871
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000142G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.6e-081760339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     +r C+ + + +++++C  ++ +lC+ C  + H+        H+v
  PH01000142G0230 17 ARACDSCMRRRARWHCAADDAFLCQACDASVHSAnplarrhHRV 60
                     578*****************************668888886655 PP
2CCT66.57.6e-23317360144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  PH01000142G0230 317 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 360
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-71562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0961562IPR000315B-box-type zinc finger
PfamPF006432.3E-61759IPR000315B-box-type zinc finger
CDDcd000213.07E-111862No hitNo description
PROSITE profilePS5101715.993317359IPR010402CCT domain
PfamPF062038.8E-18317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTKAGAATGA VLGARTARAC DSCMRRRARW HCAADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASSSPA SFPPRADDPD APAWLHGLKR RPRTPRPKPG SGKHEASAIA TMVAAASAVP  120
DLGAEESGIV GDNDVEDDDE DLLYRVPVFD PMLAELYNPV PDEGEPLEQK PTCLASLAEP  180
TPAFASGSAE ANGLSGFFVP DMELASFAAD MESLLMGVDD GFDNLGFLDD EKPQVNVDLD  240
TMAAPGPERE DRKKKRPGMM LKLDYDRVIS SWTRDGGSPW FHGERPHLDQ GESWPDFPAG  300
SRGGLSAVVT AVTGGEREAR VSRYREKRRT RLFAKKIRYE VRKLNAEKRP RMKGRFVKRT  360
ALPLSRPPPR ALPHHAQVPM VLAPHIAHGR FRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793LKRRPRT
2327343RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000142G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0871811e-109AC087181.9 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence.
GenBankAK1205631e-109AK120563.1 Oryza sativa Japonica Group cDNA clone:J013132M18, full insert sequence.
GenBankAP0149591e-109AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-109CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982006.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A3Q8BCB90.0A0A3Q8BCB9_BAMOL; COLJ
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.12e-52B-box type zinc finger protein with CCT domain