PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000148G1070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 347aa    MW: 38552.7 Da    PI: 8.0681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000148G1070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06185204120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r+ n++ H+
  PH01000148G1070 185 FVCHVCNKTFNRHNNMQMHM 204
                      89*****************9 PP
2zf-C2H213.10.00029271293123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C+k+F  k + ++H +++
  PH01000148G1070 271 FVCRRCTKPFAVKGDWRTHEKNC 293
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-5181208No hitNo description
PROSITE profilePS5015710.429185212IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128741.7E-4185204No hitNo description
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-5254291No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4257291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGAGFGVPF FEWLKPRSPP SPSSSSLSTP SRDHRALGED RGEGVQERNT MLCLPLIGRL  60
GVGEKTTPVG GQNLIKEEVS NITEEATVEL NIGLPATASG GYSSEEAPMD DADDEEEMEE  120
EKPRQHERCK MEAGEQIHSE MVESVEGSNY PCVGGEESSK GATGCRDRRY WIPTPAQILI  180
GPVQFVCHVC NKTFNRHNNM QMHMWGHGRE YRKGPESLKG TQATTLALLK LPCYCCAAGC  240
RNNVAHPRAR LLKDFRTLQT HYKRKHGAKP FVCRRCTKPF AVKGDWRTHE KNCGKRWFCA  300
CGSDFKHKRS LNDHVRSFGG SHLPVVPADA PAMPPPPPKE RILRFD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000148G1070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961925.11e-151protein TRANSPARENT TESTA 1
SwissprotQ8W0301e-92ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLK3Z6X61e-149K3Z6X6_SETIT; Uncharacterized protein
STRINGSi022296m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-91C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]