PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000149G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 344aa    MW: 36545.9 Da    PI: 5.5577
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000149G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-05444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +e  e++  C  ++  lC+ C    H        H +
  PH01000149G0140  4 LCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHHR 44
                     7******99******************99955677778554 PP
2zf-B_box26.41.4e-085999337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  PH01000149G0140 59 APKCDICQECHAYFFCVEDRALLCRSCDVAVHAAnafvsaH 99
                     689*****988********************9655566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
SMARTSM003367.2E-8147IPR000315B-box-type zinc finger
CDDcd000211.75E-5344No hitNo description
PROSITE profilePS501199.34357104IPR000315B-box-type zinc finger
SMARTSM003366.3E-1357104IPR000315B-box-type zinc finger
PfamPF006431.9E-75991IPR000315B-box-type zinc finger
CDDcd000214.52E-961104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLSP ASAAAAVSAP  60
KCDICQECHA YFFCVEDRAL LCRSCDVAVH AANAFVSAHR RFLLTGVQVG LEPDDQEPEP  120
PQPPNASAAA PLQPPPCPKK SSPTPLYSDD DIDWAAGPDV GITGNLPDWS VVDEQFSSPA  180
LRPAEPVVSK TPPKRSPRGP ITAGSAAVFD GGMPDWPLNE FFGFAEFNAG FGFAENGTSK  240
ADSAKLGSTD GSPNRRSSFS DCAATQNAQD FFGQVPEVHW SVPELPSPPT ASGLHWQGNS  300
HYGASGATDT ALFVPDICSP ENPFRCFPTA SQPQPAHLKR RRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000149G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960800.0FP096080.1 Phyllostachys edulis cDNA clone: bphyst018e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192017.11e-174B-box zinc finger protein 22-like
TrEMBLF2CWB71e-173F2CWB7_HORVV; Predicted protein
STRINGMLOC_19814.11e-174(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-41light-regulated zinc finger protein 1