PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000149G1320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 297aa    MW: 32405.5 Da    PI: 8.7005
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000149G1320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.83.1e-32271192103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++e+++++e+isw e+g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ ll 
  PH01000149G1320  27 FLTKTHQMVEERAIDEVISWGEKGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQGLLF 111
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                       i+r+k +
  PH01000149G1320 112 GIHRRKAT 119
                      ****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3522110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.98E-3223116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.7E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2827116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-162750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAGAATAQQQ KGGGGGGGRG GGGPAPFLTK THQMVEERAI DEVISWGEKG RSFVVWKPVE  60
FARDLLPLHF KHCNFSSFVR QLNTYGFRKV VPDRWEFANE NFRRGEQGLL FGIHRRKATT  120
PQSSKSGGSG ANVAFPPPLP PLPPALATTS GAGNDHSCSS ASSPPRPDLS SENEQLKKDN  180
HTLTAELAQA RRHCEELLGF LSRFLDVREL DLRLLMQEDV RGAVGSEQCR AADQEQYHGC  240
EEKSVKLFGV LLEDATRKRK RCEEAAARER PFKMIRIGEP WVGVPSSGPA RCGGEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-181811617129Heat shock factor protein 1
5d5v_B5e-181811617129Heat shock factor protein 1
5d5v_D5e-181811617129Heat shock factor protein 1
5d8k_B3e-18271205109Heat shock factor protein 2
5d8l_B3e-18271205109Heat shock factor protein 2
5d8l_D3e-18271205109Heat shock factor protein 2
5d8l_F3e-18271205109Heat shock factor protein 2
5d8l_H3e-18271205109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11018KGGGGGGGR
21622GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000149G1320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177659.11e-142heat stress transcription factor B-1-like
SwissprotQ67TP91e-139HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A446UBT41e-146A0A446UBT4_TRITD; Uncharacterized protein
STRINGPavir.Bb02269.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-55heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]