PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000150G0690
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 449aa    MW: 48898.6 Da    PI: 10.695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000150G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13338383655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  PH01000150G0690 338 SIAERVRRTKISERIRRLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 383
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.313332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-15335392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-12336387No hitNo description
Gene3DG3DSA:4.10.280.109.5E-15337390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10338383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPPMS SSGLLRYRSA PSTLLGEVCE DFLQAAPRAA SPDARADNVF  60
SRFLADHQIR DKPPALPPPA AAAAHFPDDA AMASQQQQQQ MVFHSQQQQQ QQQMASVEGL  120
YRTVSSTGME TAAATVGRAG SLIRQSSSPA GFPNHLNMDN GYGSMLRAGM GVGFRNGTNA  180
AAADSSGGGG RLKGQLSFSS RQGSLMSQIS EMGSEELGGS SPEAAGGGRG YIPGYPMSSG  240
WEESSLMSEN LSGMKRPRGS SETAQVRLGL SHRFQFISIS FVVSAGLRRI CVQNGLAHQF  300
SLPKTSSEMA AIEKFLQFQD AVPCKIRAKR GCATHPRSIA ERVRRTKISE RIRRLQELVP  360
NMDKQTNTAD MLDLAVDYIK DLQKQVKDTH AITIAFPGKR GERKRNPRLW ERVVRMLSLL  420
IPTEIRRYHV RPFRAQKQLT GPFRPTPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000150G0690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546341e-159AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H3450.0A0A2S3H345_9POAL; Uncharacterized protein
STRINGMLOC_67834.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-49bHLH family protein