PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000150G1070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 409aa MW: 44679.1 Da PI: 6.0113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000150G1070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	240	259	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ PH01000150G1070 240 FSCPVCFKTFNRYNNMQMHM 259 89*****************9 PP
2	zf-C2H2	12.6	0.00042	326	346	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ PH01000150G1070 326 CRKCGKAFAVKGDWRTHEKNC 346 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	240	267	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.0E-6	240	259	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	240	262	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.7E-6	306	344	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-5	311	344	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	324	344	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	324	344	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	350	373	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEDPYTSYFR NPYYYYCASS SLTPPPTPHL PPPLPPYTTL YPAVATAPHQ YPASFFQPPP 60 PPPHHHHDSA PPSPPLREAL PLLSLSPTPA FHPHDAADSD SDDDDDCYLQ EAAAGSTTPA 120 RMPLFADLNC MPSYCDDGDP MDVEAGTSAT DDAAVALRIG LPACSSCGGT EADLLSGLSG 180 RAVAGIELDD EEEEEECKID GGGGDEVVPL GFPSTPIGKL NKGQYWIPTP SQILIGPTQF 240 SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGVQPTA MLRLPCYCCA PGCRNNIDHP 300 RAKPLKDFRT LQTHYKRKHG LKPFLCRKCG KAFAVKGDWR THEKNCGKLW YCLCGSEFKH 360 KRSLKDHARA FGHGHGAFGC NGADGFDDDD EGAVSEIEQD CAGARSSFR

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEDPYTSYFR NPYYYYCASS SLTPPPTPHL PPPLPPYTTL YPAVATAPHQ YPASFFQPPP  60
PPPHHHHDSA PPSPPLREAL PLLSLSPTPA FHPHDAADSD SDDDDDCYLQ EAAAGSTTPA  120
RMPLFADLNC MPSYCDDGDP MDVEAGTSAT DDAAVALRIG LPACSSCGGT EADLLSGLSG  180
RAVAGIELDD EEEEEECKID GGGGDEVVPL GFPSTPIGKL NKGQYWIPTP SQILIGPTQF  240
SCPVCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGVQPTA MLRLPCYCCA PGCRNNIDHP  300
RAKPLKDFRT LQTHYKRKHG LKPFLCRKCG KAFAVKGDWR THEKNCGKLW YCLCGSEFKH  360
KRSLKDHARA FGHGHGAFGC NGADGFDDDD EGAVSEIEQD CAGARSSFR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000150G1070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096907	0.0	FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-120	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A3L6PSC8	0.0	A0A3L6PSC8_PANMI; Zinc finger protein WIP2-like
STRING	Pavir.Fa00506.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]