PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000152G0240

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 193aa MW: 21357.3 Da PI: 9.6006

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000152G0240	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.3	2.3e-30	19	69	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LHerFv+av++LGG++kAtPk++l++m +kgLtl+h+kSHLQ PH01000152G0240 19 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRMMRMKGLTLYHLKSHLQ 69 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-28	16	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	1.25E-13	19	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-22	19	70	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-8	21	70	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-11	63	94	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEGSYGGGAG AVALSRDPKP RLRWTPDLHE RFVDAVTKLG GPDKATPKSV LRMMRMKGLT 60 LYHLKSHLQV QKKLQMRIEA QGRYLKAILE KAQKNISFDA NGAANLESTR SQLMDFNLAL 120 SGFMDNATRV YEENSEQLVK AITDDNLKAN NLGFQLNHVG NQEAKDVKCT PKTEDSFLLD 180 LNIRGGYDLS ST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	19	77	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000152G0240

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652754.2	2e-63	PREDICTED: myb family transcription factor APL-like
TrEMBL	Q7XPT2	1e-100	Q7XPT2_ORYSJ; OSJNBa0083N12.9 protein
STRING	OGLUM04G23960.1	1e-100	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	2e-30	myb-related protein 1