PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000154G0710
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 434aa    MW: 46254.8 Da    PI: 8.6386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000154G0710genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044191214123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg++ s + +L+ H  + H
  PH01000154G0710 191 FPCKVCGEVLSKPQQLELHHAMkH 214
                      89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.725191219IPR007087Zinc finger, C2H2
PROSITE patternPS000280193214IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-11216432No hitNo description
Gene3DG3DSA:3.90.228.101.4E-7217432IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAGSGSCSSL LRGFVSLFFL LFLHIGHAGC CFSPGSAAQA HEEDDAAQDA DGKGGGNKRR  60
KISPLAFSPS VSSSTVADER IRARRRHVSS LATNLRFYLH RIFSSSSSAA KNAVPAAEEE  120
EAVTTTVSSP LAQSLPQPPA SVVLSTPSSP CASPFLSPQS LSITPVPSSP QKQLPQATRQ  180
SSRSFARGDV FPCKVCGEVL SKPQQLELHH AMKHSLSELS HLDYSMNIIR MIFLAGWKPA  240
AAGAVEPPAV RRILKIHHNP RALARLEEYR DLVRARAAHR CAGASSGGAV VEERCIADGN  300
ERLRFHCSTM LCSLGAGVCG SPYCCTCSIL RHGFAGKQAD VDGIATYSTG WAAHASLPED  360
VEREFAFLQV RRAMLVCRVV AGRVGRGAAD DKVSYDSMVP VPASGGRRVE GDVELLVFNP  420
RAVLPCFVII YSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000154G0710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352050.0AC135205.4 Oryza sativa Japonica Group chromosome 3 clone OJ1012B02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629299.10.0uncharacterized protein LOC4332342
TrEMBLA0A0D9Z5240.0A0A0D9Z524_9ORYZ; Uncharacterized protein
STRINGOGLUM03G11560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.18e-59C2H2 family protein