PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000155G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 238aa    MW: 26210.3 Da    PI: 7.8652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000155G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.5e-3061167392
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ ++   ++s   +++++s g      
  PH01000155G0570  61 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDFMghLPSSMPLMQDENSLGmvsgam 154
                      78*************************************************************9999977765555555555544444666666 PP

              TCP  89 .........kaak 92 
                               ++++
  PH01000155G0570 155 pynyageswNNSS 167
                      6666666653333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.95162120IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-2762125IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSGVQRIIDD ERRRVRMISG SQQQQQQQTT DEELARKHTA AVATSRQWSA QTESRIVRVF  60
GGKDRHSKVK TVKGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAARHEIDKL  120
PPLQFPPQDF MGHLPSSMPL MQDENSLGMV SGAMPYNYAG ESWNNSSVHE CGAGSPQVAA  180
AAPAAHHSPF PSLLSLAPGS HQLVFYSSEA EQFPVDNLDS QSLSLSSARA FHDQTGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1967121155Putative transcription factor PCF6
5zkt_B3e-1967121155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000155G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855481e-117BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds.
GenBankBT0858131e-117BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds.
GenBankBT0862231e-117BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds.
GenBankEU9702171e-117EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds.
GenBankKJ7280081e-117KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168249.15e-97uncharacterized protein LOC109753738
TrEMBLA0A0A9B7Y01e-102A0A0A9B7Y0_ARUDO; Uncharacterized protein
STRINGPavir.J15913.1.p4e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-38plastid transcription factor 1