PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000162G1010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family YABBY
Protein Properties Length: 197aa    MW: 21704.4 Da    PI: 8.6101
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000162G1010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.89.6e-7361675170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                      +++e+vCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+  ++  ++++hl+++   +++ + ++++++ +s   +++s      +
  PH01000162G1010   6 TQAEHVCYVHCNFCNTILAVSVPGNSMLSIVTVRCGHCTNLLSVNLRGLMHSAPVQDHLQQENLSKVHSTSGFRDQSGHSELGSSSSRFGLPMM 99 
                      678**********************************************************************999988776655554444444 PP

            YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +n++e++ +++p   P +krqrvPsaynrfikeei+rika+nP+ishreafs+aaknWah+P+ihfgl
  PH01000162G1010 100 -YSAQNDQEQTLHAHP---PADKRQRVPSAYNRFIKEEIRRIKANNPEISHREAFSTAAKNWAHYPNIHFGL 167
                      .336666666676555...99*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-727167IPR006780YABBY protein
SuperFamilySSF470952.09E-7114161IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4118161IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010158Biological Processabaxial cell fate specification
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSAQITQAEH VCYVHCNFCN TILAVSVPGN SMLSIVTVRC GHCTNLLSVN LRGLMHSAPV  60
QDHLQQENLS KVHSTSGFRD QSGHSELGSS SSRFGLPMMY SAQNDQEQTL HAHPPADKRQ  120
RVPSAYNRFI KEEIRRIKAN NPEISHREAF STAAKNWAHY PNIHFGLSPG CEGGGKKHVD  180
EAIATAPAPK KIQGFYS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000162G1010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0950310.0FP095031.1 Phyllostachys edulis cDNA clone: bphyem104o16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.11e-101protein YABBY 6-like isoform X2
SwissprotQ2QM173e-95YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1511e-105A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGSi023308m3e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-54YABBY family protein