PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000165G0660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 285aa    MW: 31288.6 Da    PI: 4.5933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000165G0660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-1435100147
                      TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l+v +++ lG++                     W+ Ia++++ gRt++++k++w++ 
  PH01000165G0660  35 RGSFSQQEEDLIVALHEILGNRsviqciqnlqcdeqndgkrvGWSQIASHLP-GRTDNEIKNFWNSC 100
                      899*************************************************.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.972129IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.8E-111540IPR009057Homeodomain-like
SuperFamilySSF466891.26E-1515110IPR009057Homeodomain-like
PROSITE profilePS5129416.9730105IPR017930Myb domain
SMARTSM007173.7E-1234103IPR001005SANT/Myb domain
PfamPF002495.9E-1235100IPR001005SANT/Myb domain
CDDcd001672.78E-83798No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1841106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNDWHWPACV RAGLQRCGKS CRLRWINYLR PDLKRGSFSQ QEEDLIVALH EILGNRSVIQ  60
CIQNLQCDEQ NDGKRVGWSQ IASHLPGRTD NEIKNFWNSC LKKKLRQRGI DPSTHKPISA  120
TAAAVALPDT EDQDQKPPAA AADGLAPKQS MFDPFPVADF GGGFDLGAPN MVALYSQFDG  180
KASDAGFVAD YSSVLDVSEN LGYGESSSNS SNWNCADVGN VLDSEVLHWA SGAAAKAEPF  240
AEMEQQHSGY EGGQVEDDTS LEHKFSLPCQ EQSLAHFDFN LEYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-171610540108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100106LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000165G0660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1117102e-77AF111710.1 Oryza sativa subsp. indica putative dnaJ-like protein, putative myb-related protein, putative farnesyl pyrophosphate synthase, and hypothetical protein genes, complete cds.
GenBankCT8377892e-77CT837789.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN047M16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-125myb-related protein Hv33
SwissprotP200271e-90MYB3_HORVU; Myb-related protein Hv33
TrEMBLI1PXK71e-124I1PXK7_ORYGL; Uncharacterized protein
TrEMBLK3Z8601e-124K3Z860_SETIT; Uncharacterized protein
STRINGORGLA05G0210500.11e-124(Oryza glaberrima)
STRINGSi022730m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.15e-46myb domain protein 50