PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000170G1390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 403aa    MW: 43137.8 Da    PI: 6.8446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000170G1390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2913.1e-89464014374
             GRAS   4 lLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       L e+A+  ++gd   a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps +++++++ +l a+k+fsevsP+l+f+
  PH01000170G1390  46 SLAEAAKLAEAGDSFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGEAPAPSVSTPYDVVLKLRAYKAFSEVSPVLQFA 135
                      6999**********************999555566******************99....888999999999*********************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      hlt+ qa+l+++ g +++H+ Dfdi++G QW++L+q+La+R +++  l++T+++sp+s+++ el+ ++e+L++fA+elgv f+f v+   ++++
  PH01000170G1390 136 HLTTVQAVLDELGGTSCIHVFDFDIGMGEQWASLMQELAQR-RPATVLKVTALVSPASHHQLELQLIHENLSSFADELGVLFQFAVF---NIDN 225
                      ****************************************9.7889****************************************9...7888 PP

             GRAS 189 leleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      l++ eL ++  g+++aV+l +   ++         + +++L+lvk+l +kvv+ v++ +d+++ +F++++++a+  +  l++sl+a   +++++
  PH01000170G1390 226 LDPAELlAIAGGDVVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVISVDRGCDRTELPFAAHLFQAFLSCLFLLESLDAV-CTDADT 310
                      88776637777***********99998........4566*********************************************998.58999* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                      + k+Er+l++++++++v  ++++    + ++  Wr  + +aGF pv+ s++a++qa++ll+kv+ +g+rve++  gsl+l+W++ +LvsvSaWr
  PH01000170G1390 311 AGKIERFLVQPAVEQCVLGRHRA---AMDKAPPWRTVFASAGFVPVQASTFAESQAESLLKKVPARGFRVEKRaPGSLCLYWQRGELVSVSAWR 401
                      ******************99888...9999*****************************************88478999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.40817380IPR005202Transcription factor GRAS
PfamPF035141.1E-8646401IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPFAGSAREG HAGTLLLQQQ QQQGLTLPGL AAGKVSGAGS FWEPTSLAEA AKLAEAGDSF  60
GAREILARLN YRLPAAPTAG TPLLRSAFYF KEALRLALSP TGEAPAPSVS TPYDVVLKLR  120
AYKAFSEVSP VLQFAHLTTV QAVLDELGGT SCIHVFDFDI GMGEQWASLM QELAQRRPAT  180
VLKVTALVSP ASHHQLELQL IHENLSSFAD ELGVLFQFAV FNIDNLDPAE LLAIAGGDVV  240
AVHLPVGSAH VAAMPAILRL VKRLGAKVVI SVDRGCDRTE LPFAAHLFQA FLSCLFLLES  300
LDAVCTDADT AGKIERFLVQ PAVEQCVLGR HRAAMDKAPP WRTVFASAGF VPVQASTFAE  360
SQAESLLKKV PARGFRVEKR APGSLCLYWQ RGELVSVSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-307540132375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000170G1390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLM8C2D30.0M8C2D3_AEGTA; Uncharacterized protein
STRINGEMT283940.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-94GRAS family protein