PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000171G1010

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 294aa MW: 32487.8 Da PI: 8.653

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000171G1010	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	92	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ qlG+g+W+ I++ + ++Rt+ q+ s+ qky PH01000171G1010 92 PWTEEEHRKFLDGLMQLGKGDWRGISKNFVTTRTATQVASHAQKY 136 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.134	85	141	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-17	86	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-18	88	140	IPR006447	Myb domain, plants
SMART	SM00717	2.2E-10	89	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-11	90	135	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-12	92	136	IPR001005	SANT/Myb domain
CDD	cd00167	7.59E-10	92	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEQQEEGKTK VLFRLFGVEV LGGGDEEAAE EEDGFVEESL KKCSSMPNLT SIDPLPQAGE 60 AGKGYASDDA ELASGQQKRR RRKAQERKKG IPWTEEEHRK FLDGLMQLGK GDWRGISKNF 120 VTTRTATQVA SHAQKYFLRQ TKPRKKKHRA SLFDVVIADF NGDQVHTLIR STPIPNIDQI 180 LQLILSSFSL WFQVPSPQSV ATKPAPTQEI IHTYRGDVPI PSYSDAGGRR SNKVQVDELT 240 DYVKRSKFPD EISLATIASG LEMASSVSSL ELSIAPPLGA VEAIKVLRFS CRA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	82	KRRRRK
2	77	88	KRRRRKAQERKK
3	78	88	RRRRKAQERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000171G1010

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP101010	1e-125	FP101010.1 Phyllostachys edulis cDNA clone: bphyem122l11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662604.2	1e-108	PREDICTED: transcription factor DIVARICATA-like
Swissprot	B8BI93	2e-93	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	2e-93	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-113	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	OB10G25700.1	1e-109	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]