PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000173G0700
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 222aa    MW: 23489.7 Da    PI: 10.3963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000173G0700genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20105155155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GVr+++ +g+W+AeIrdp     +   r +lg+f+tae+Aa+a++ a+++++g
  PH01000173G0700 105 SRFRGVRQRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEQAARAYDVAALEFRG 155
                      789*******.**********7.....338*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-22105164IPR016177DNA-binding domain
PfamPF008472.7E-13105155IPR001471AP2/ERF domain
PROSITE profilePS5103225.185106163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-31106164IPR001471AP2/ERF domain
SMARTSM003807.8E-36106169IPR001471AP2/ERF domain
PRINTSPR003677.2E-11107118IPR001471AP2/ERF domain
CDDcd000184.97E-26112163No hitNo description
PRINTSPR003677.2E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVPRLERAAG FQLPNTEQEN SLFLRALISV VSGDTTVPAL HPESAPPVAS AAAAACARCG  60
ADGCLGCESF AADAKAATGS SCEEEECSAN CVKGGVGKRR RGRGSRFRGV RQRPWGKWAA  120
EIRDPHRAVR KWLGTFDTAE QAARAYDVAA LEFRGQRAKL NFPAAAASSA SASASAHASI  180
LQTPDSRTIL LCKLRPTRSR RPKLAANSRA MESGVLWLVN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20103163263ATERF1
3gcc_A1e-20103163263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000173G0700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-75CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.14e-72ethylene-responsive transcription factor ERF109
TrEMBLA0A3B6NU931e-72A0A3B6NU93_WHEAT; Uncharacterized protein
STRINGOS02T0764700-012e-71(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-24ERF family protein