PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000176G0540
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 1122aa    MW: 124734 Da    PI: 6.6749
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000176G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.3e-15135211172
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l  +d++ ++W++++i+r++++r++lt+GW+ Fv+ +
  PH01000176G0540 135 FCKTLTASDTSTHGGFSVPRRSAEKIfpsldfsM-QPPA-QELHARDLHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGK 211
                      99*****************************954.4444.48**********************************976 PP
2Auxin_resp1187.7e-39250333183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  PH01000176G0540 250 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 333
                      79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-36124253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-28127238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-13134212No hitNo description
SMARTSM010191.2E-8135226IPR003340B3 DNA binding domain
PfamPF023623.9E-13135211IPR003340B3 DNA binding domain
PfamPF065071.5E-33250333IPR010525Auxin response factor
PfamPF023096.9E-99871073IPR033389AUX/IAA domain
PROSITE profilePS5174527.0579881072IPR000270PB1 domain
SuperFamilySSF542773.73E-710001067No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MMRQQQPASS AGAAAGSECE GEKKAPAINS ELWHACAGPL VSLPPAGSLV VYFPQGHSEQ  60
VAASMQKDID AHVPSYPDLP SKLICLLHNV TLHADPETDE VYAQMTLQPV TSYGKEALQL  120
SELALKQARP QTEFFCKTLT ASDTSTHGGF SVPRRSAEKI FPSLDFSMQP PAQELHARDL  180
HDNVWTFRHI FRGQPKRHLL TTGWSLFVSG KRDDKQQLLL GIRRANRQPT NISSSVLSSD  240
SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE  300
TEELGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF  360
FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDSQTQNTVM PGLSLVQWMN  420
INMQQSSSFA NTAMQSEYLR SLSNPSMQNI GAADLSRQLC LQNQLPQQNS MQFNAPKLPQ  480
QMHPINELSK AALPLNQLGV STKPQEQIQD ASNLQRQQQS MNQLLPLSQA QMQQQQQQLS  540
MSQNQQPATS QPLLPHHHHQ QQHQQKLLQQ QQQQQLLLQQ QQLQQQQQQH QNQQQQQLNK  600
MPAQLPNLAN QQLQLSDQQL QVQLLQNLQQ QQLSLLSQPS VTLAQLPIIQ EQQKMLLDMQ  660
QQLSNSHSLT QQQMMPQQST KVPSQAAPLP PPMQQESQQK LPKKQAVPAD TSETAIPPNA  720
SLNVISANGS PLMMTCATHS VVTEEIPSCS TSPSTANGNH LLHPVVGRNQ HCTIINTKKV  780
PQSTAPMSVP SSLDVVTATP RMTKELPKLN PNVKQSVMAS KLPNAAAGPQ NFVNNAPPTD  840
YLETASSATS VWLSQTDGLL HQSFPMSNFN QQQMFKDAPP DTEIHGEDPS NNALFGISND  900
AHLGFPVGAD SFLTNGIDAA KYQNHISTDI DNNYRIPKDA QQEISSSMVS QSFGASDMAF  960
NSIDSGINDG AFLNRSSWPP APPLKRMRTF TKVYKRGAVG RSIDISQFSG YDELKHALAR  1020
MFSIEGQLEE WQRIGWKLVY KDHEDDILLL GDDPWEEFVN CVRCIRILSP QEVQQMSLDG  1080
DLGNNILPNQ ACSSSDGGNA WRARCNQNSG NLSTGSYDQF E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1562435447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000176G0540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563519.10.0auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLI1GWQ90.0I1GWQ9_BRADI; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]