PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000178G0330

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 237aa MW: 25891.1 Da PI: 7.6447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000178G0330	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.9e-09	75	123	4	46
HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLek 46 +h+ +Er RR++iN ++e L+el+P +s ++ + ++ L++ PH01000178G0330 75 SHSLAERARREKINARMELLKELVPGCSkvsgttLVLDEIINHVQSLQR 123 8*************************96555555444555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.03E-9	69	126	No hit	No description
SuperFamily	SSF47459	7.07E-15	69	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.056	71	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-14	72	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	75	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	77	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAMTGEGGRR RGGEEEEVGL AQRKKPRVEE EGKAAKKGKT AAGGEEKAGG GGDGEEEEKP 60 AYVHVRVRRG QATDSHSLAE RARREKINAR MELLKELVPG CSKVSGTTLV LDEIINHVQS 120 LQRQVEYLSM RLAAVNPRVD FGGLGNFLTT ECGRITGLNC KNGMDLEQVT WPEMGIHGAR 180 HLMQLQQQFW HGDLAHPHQP PSQWEKRGNA HPPVFGNSSS SLFGYDLASS ECLVNK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000178G0330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095332	0.0	FP095332.1 Phyllostachys edulis cDNA clone: bphyem123o05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227502.2	1e-127	transcription factor bHLH48
Swissprot	Q8VZ02	5e-47	BH048_ARATH; Transcription factor bHLH48
TrEMBL	I1GXA9	1e-126	I1GXA9_BRADI; Uncharacterized protein
STRING	BRADI1G35990.1	1e-126	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-50	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]