PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000178G1080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 300aa    MW: 31287.6 Da    PI: 10.1849
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000178G1080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-074064226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C  f+ t  C++G++C+F H 
  PH01000178G1080 40 KSKPCTKFFSTAGCPFGASCHFLHN 64
                     7789********************7 PP
2zf-CCCH19.61.7e-06103128227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  PH01000178G1080 103 KTRMCNKYNTAEGCKWGNKCHFAHGE 128
                      89**********************96 PP
3zf-CCCH34.82.8e-11266289125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      +kt+lC +f + G C +GdrC+FaH
  PH01000178G1080 266 FKTKLCENFNK-GSCTFGDRCHFAH 289
                      69*********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.33865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9153866IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-63966IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-54064IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-84064IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-1397131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-8100132IPR000571Zinc finger, CCCH-type
SMARTSM003561.5101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361101129IPR000571Zinc finger, CCCH-type
SMARTSM003222.9E-11171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.2E-15172240IPR004088K Homology domain, type 1
PROSITE profilePS5008414.948172236IPR004088K Homology domain, type 1
SuperFamilySSF547911.13E-14174265IPR004088K Homology domain, type 1
CDDcd001051.43E-13174237No hitNo description
PfamPF000139.6E-12174238IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-16263297IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.652265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8265296IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9266289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDAGRKRAAP EGANGAGAGA GGGAKRARES ESFQMGVGSK SKPCTKFFST AGCPFGASCH  60
FLHNFPGGYQ AVAKMTNLGG PAPPARMPMG PSVTDGPPTP AVKTRMCNKY NTAEGCKWGN  120
KCHFAHGERE FGKPMPLNNS MAPSMGPRPN GYFEPLPMPG SDMVPPSTFG ASATAKISVD  180
ASLAGAIIGK GGANTKHISR MTGAKLAIRD NEADPNLKNI ELEGTFDQIK HASTMVKELI  240
VRISGNAPPA KNPARGSHAR GPGSNFKTKL CENFNKGSCT FGDRCHFAHA ESELRKPAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000178G1080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914800.0FP091480.1 Phyllostachys edulis cDNA clone: bphyem209p22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563620.10.0zinc finger CCCH domain-containing protein 44 isoform X2
SwissprotQ69XQ31e-170C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLI1GXA20.0I1GXA2_BRADI; Uncharacterized protein
STRINGBRADI1G35920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-74C3H family protein