PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000183G0650
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 459aa    MW: 50776.9 Da    PI: 7.2691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000183G0650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.6e-1161111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      +++WT eE+  l+ +++++G g W+tI +          R+  ++k++w++
  PH01000183G0650  61 KQKWTSEEETALKAGIAKHGAGKWRTILKDPEfsnvlRYRSNVDLKDKWRN 111
                      79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6256117IPR017930Myb domain
SuperFamilySSF466895.38E-1558115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-1358112IPR009057Homeodomain-like
SMARTSM007172.2E-760115IPR001005SANT/Myb domain
PfamPF002492.0E-761112IPR001005SANT/Myb domain
CDDcd116602.62E-1962113No hitNo description
SMARTSM005266.6E-10170235IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.01E-14170249IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.734172240IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-13172242IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.7E-8177233IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MANEDWEWKK IMGQDLSETP PSSPFISPPY KSRAQDTRWT FEELLLKKKP ILGPEHMGAP  60
KQKWTSEEET ALKAGIAKHG AGKWRTILKD PEFSNVLRYR SNVDLKDKWR NMNVTVNGSG  120
TRDNRRTPTV KKPRSTPKYE SHSTAFTSVI SDGDDDIAEA MPVATSSSTK RSLSRLDNII  180
TEAVRSLNEP TGSYKTAIAN YIEEQYWPPA DFEHVLSSKL NELTASGKLI RVNRKYRIAP  240
SSSFSEGRSS KMVLLEDIQR EPMKVERDDV AILTKSQVDC ELARMRTMTA EEAAVAAARA  300
VGEAEAIMAE AEAAVREAEV AEADAVAAQA FAEAAMLTLK NRNSAKLLSL SDAYLLLVQL  360
LQPVLLEPSE LMTMPFRYFT SCELISEPSG ANWPLCISFL NAGSSLHQHM CCGITASFKI  420
AHAISPALLR RSPVRRGSGE DLLIPDLHMV KGDLHRLG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000183G0650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1011640.0FP101164.1 Phyllostachys edulis cDNA clone: bphylf059a02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620817.11e-133single myb histone 6
RefseqXP_015620818.11e-133single myb histone 6
RefseqXP_025877961.11e-133single myb histone 6
SwissprotC0HIA31e-105SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0E0MPJ61e-134A0A0E0MPJ6_ORYPU; Uncharacterized protein
STRINGOPUNC12G16890.21e-135(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-66telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]