PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000183G0850
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 191aa    MW: 21011.2 Da    PI: 8.7183
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000183G0850genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32101157158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e+ekkl  k+r pylheSRh+hAl+R+Rg gGrF
  PH01000183G0850 101 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRNPYLHESRHQHALKRARGAGGRF 157
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-3599160IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.555100160IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-26102157IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.9E-23103125IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860105125IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.9E-23134157IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSIDHRTDEQ QQHQKQTESK DQQEAPANSS GSQTMVATPS ADYVTPYAPH ELGHAMGQIA  60
YPNIDPYYGS LYAAYGGQPM MHPPLVGMHP TGLPLPTDAI EEPVYVNAKQ YNAILRRRQS  120
RAKAESEKKL VKGRNPYLHE SRHQHALKRA RGAGGRFLNS KSDDKEEHSD SSSKEKQNGI  180
VPHTSGQPSA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21100164165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000183G0850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1000820.0FP100082.1 Phyllostachys edulis cDNA clone: bphylf061f23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963231.11e-114nuclear transcription factor Y subunit A-7
RefseqXP_025809412.11e-114nuclear transcription factor Y subunit A-7-like
TrEMBLA0A0A9P8Y01e-114A0A0A9P8Y0_ARUDO; Uncharacterized protein
STRINGPavir.J06031.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-40nuclear factor Y, subunit A7