PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000185G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 215aa    MW: 22659.6 Da    PI: 8.0793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000185G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0005881103123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F +   L  H  +H
  PH01000185G0320  81 HRCSVCGKAFASYQALGGHKASH 103
                      79**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-1081103No hitNo description
PfamPF139124.6E-1381105IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.15981108IPR007087Zinc finger, C2H2
SMARTSM003550.02381103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-10131158No hitNo description
PROSITE profilePS501579.307136158IPR007087Zinc finger, C2H2
PfamPF139121.1E-12136160IPR007087Zinc finger, C2H2
SMARTSM003550.21136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAVEAVLEAA VIPSPPSRET AAAGGSEEES TVQHVEGWAK RKRSRRQRAL APTEEEYLAL  60
CLLMLARGHR DRVPEPAAAE HRCSVCGKAF ASYQALGGHK ASHRKPPAPA AGAEEPQATA  120
PSSSAVSSSG SGSKLHECNV CRKTFPTGQA LGGHKRCHYD GTIGSKAAVS TSTGRGFDLN  180
LPALPDIAER CTAEAEEEEV LSPLAFKKPR LMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000185G0320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0975190.0FP097519.1 Phyllostachys edulis cDNA clone: bphyem107g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150049.15e-77zinc finger protein 1-like
SwissprotQ424301e-48ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3B6LH893e-76A0A3B6LH89_WHEAT; Uncharacterized protein
TrEMBLA0A446TX493e-76A0A446TX49_TRITD; Uncharacterized protein
STRINGTraes_4DS_676CACEAC.14e-72(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-44salt tolerance zinc finger