PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000187G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 328aa    MW: 35479.4 Da    PI: 8.3244
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000187G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.25.8e-33171227158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  PH01000187G0380 171 EEPVFVNAKQYHAILRRRQMRAKLEAQNKL-VKGRKPYLHESRHLHAMKRVRGSGGRF 227
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-36169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.773170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-27172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.7E-24173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.7E-24204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEEHPVHSMP NYDFLSGNGY PMKQLVHSRY SDGDSLSTKS EQSHQEASAV SDSSLNGQYT  60
STQSGNNNNE SCGKRDQGMI KSVLSLGNPE AAFSPPKFDY GQPFEENAMG EGLARGPTPS  120
AVDSACVSYP YAADPYYGGV LTGYTTHAIV HPQNNGTANS RVPLPVEPWA EEPVFVNAKQ  180
YHAILRRRQM RAKLEAQNKL VKGRKPYLHE SRHLHAMKRV RGSGGRFLNR KELQEQQQAS  240
PQPPAGRASG AMVLGKNLCT ENSTSCSPST PTSSEISSVS IGGGVLAHQE HISFSSADFL  300
PTMNFGSQNG GEKMAVNGLQ HRVPTMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21171232263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000187G0380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1011580.0FP101158.1 Phyllostachys edulis cDNA clone: bphyem208d20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984044.11e-143nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004984045.11e-143nuclear transcription factor Y subunit A-4 isoform X1
SwissprotQ9LNP67e-43NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A0A9P2R91e-150A0A0A9P2R9_ARUDO; Uncharacterized protein
STRINGLPERR03G18110.21e-150(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-39nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]