PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000188G0440
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 245aa    MW: 27129.5 Da    PI: 6.4034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000188G0440genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-183184356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  PH01000188G0440 31 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 84
                     4568999**********************************************9 PP
2HD-ZIP_I/II128.13.7e-4130120191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEk+y+aLkr++da+k+en++L +++++L++e+
  PH01000188G0440  30 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKEYDALKRQLDAVKAENDALLSHNKKLQAEI 120
                      69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-191287IPR009057Homeodomain-like
SuperFamilySSF466893.94E-201388IPR009057Homeodomain-like
PROSITE profilePS5007117.412686IPR001356Homeobox domain
SMARTSM003891.2E-172990IPR001356Homeobox domain
CDDcd000864.53E-173187No hitNo description
PfamPF000466.1E-163184IPR001356Homeobox domain
PRINTSPR000316.9E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000316.9E-66682IPR000047Helix-turn-helix motif
PfamPF021837.7E-1386126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAPMLGKQPM YGGGGANDDE LSDDGSQAGE KKRRLNVEQV RTLEKNFELG NKLEPERKMQ  60
LARALGLQPR QVAIWFQNRR ARWKTKQLEK EYDALKRQLD AVKAENDALL SHNKKLQAEI  120
LALKGREAAS ELINLNKETE ASCSNRSENS SEINLDISRT PPSESPMDPP PPHQQGGCMI  180
PFYPSVARTA GVDIDQLLHS SSVPKMEHGG ANVQASDTAS FGNLLCGVDE PPPFWPWADH  240
QHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000188G0440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590410.0AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597470.0AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662450.0AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985543.11e-145homeobox-leucine zipper protein HOX21 isoform X2
SwissprotQ8S7W91e-136HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB51e-153A0A3L6SDB5_PANMI; Uncharacterized protein
STRINGPavir.Ia04323.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-80HD-ZIP family protein