PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000191G0100

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 307aa MW: 32862 Da PI: 6.7431

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000191G0100	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	169	227	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r NR +A rs +RK +i+eLe+kv++L ae ++L +l l+ + l++e+ PH01000191G0100 169 KKAKRIWANRQSAARSKERKMRYIAELERKVQTLHAEATTLSTQLALLQRNTTGLTTEN 227 899******************************************99998887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-16	165	229	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	167	230	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-9	169	226	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-10	169	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.2E-10	169	223	No hit	No description
CDD	cd14703	8.33E-22	170	219	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDKSPIPEGG GGGDAGGGGN GNDLPPPPPP PPECDISRMP DFPPRNPGHR RAHSEIIGLP 60 DDLDIGVPGA GDAPSLSEEN EEELFSMFLD VEKLNSPCGA SGAESSCVMA GAGAGPRPRH 120 QHSHSMDVSS YDKTEQLLGT PAMKGMSPAE ATKAMSTAKL AELALVDPKK AKRIWANRQS 180 AARSKERKMR YIAELERKVQ TLHAEATTLS TQLALLQRNT TGLTTENSEL KMRLQNAEQQ 240 VHLQDALNGT LKSELQRLKM ATGQMGNGGG MNFGGLPHSF GRNQQMFHPQ NQAMQPLLTT 300 HQMQHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000191G0100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181798.1	1e-137	transcription factor RF2a-like
Refseq	XP_020181799.1	1e-137	transcription factor RF2a-like
Swissprot	Q69IL4	1e-119	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A3B6RIM4	1e-142	A0A3B6RIM4_WHEAT; Uncharacterized protein
TrEMBL	A0A446XE69	1e-142	A0A446XE69_TRITD; Uncharacterized protein
STRING	Si015587m	1e-135	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	4e-78	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]