PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000194G0800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 379aa    MW: 42619.8 Da    PI: 4.4249
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000194G0800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.4e-34461362101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed+++++++sws+ gn f+v+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  PH01000194G0800  46 FLTKTYDLVEDPSTDSVVSWSRAGNGFIVWDPHVFADVLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 130
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                       ikr+k
  PH01000194G0800 131 MIKRRK 136
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDPVAASIVK EELLEQPQDA AAGAAAEAEG APLPMEGLHE VGPPPFLTKT YDLVEDPSTD  60
SVVSWSRAGN GFIVWDPHVF ADVLLPRLFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG  120
FLRGQRHLLK MIKRRKPPPS NVPPSRQQAL TSCLEVGEFG FEEEIDRLKR DKNNLITEVV  180
KLRQEQQATK DYVQAMEERL QAAEQKQVQM MGFLVRALRN PEFLQQLVQQ QDKRKELEDA  240
ISKKRRRPID NVPFYSPGET SQSEQLESPF LFDSGVLNEL SEPGIPELEN LALNIQELGK  300
GKADEEQKDQ ASAQAELNDD FWAELLVEDF GDKAGQSELE GTEDVDELAQ PANTAASVLL  360
HTILKNPVHF AFNDTNLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-26201351129Heat shock factor protein 1
5d5v_B3e-26201351129Heat shock factor protein 1
5d5v_D3e-26201351129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKMIKRR
2232246KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000194G0800
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234740.10.0heat stress transcription factor A-2c
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLI1I4240.0I1I424_BRADI; Uncharacterized protein
STRINGBRADI3G26920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]