PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000198G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 907aa    MW: 99759.6 Da    PI: 8.0806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000198G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.9e-19400499198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e+
  PH01000198G0380 400 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLD-PEG 491
                      89**************************555566778***************9989999999***9.********************765.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  PH01000198G0380 492 KLVMGFRK 499
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-30395501IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-20397499IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-22398499No hitNo description
PROSITE profilePS5086311.364400501IPR003340B3 DNA binding domain
PfamPF023629.6E-16400499IPR003340B3 DNA binding domain
SMARTSM010199.2E-22400500IPR003340B3 DNA binding domain
PROSITE profilePS5105013.844655705IPR011124Zinc finger, CW-type
PfamPF074962.3E-10660702IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MAPTGSTWSD SYVVAISAEY AGVLCKVVGL GGGLTCVRLR VPDACMHVCP LFCVSSGSFE  60
QGSFCETFHS EVAGWRTCEA CGKRLHCGCI VSVHAYVLLD AGGVDCILCA RKSHAAMAPS  120
QIWSSSMHMP QNVVDRKDSF VKSWRPPAGQ FSSQWRQTNL WSVSSIQSDL QQRLAYEFDR  180
PSGSEKLLPG RTFIHAQEKK FDDMHDRPTT PAGMNQIIRD RYANGHGQHT SLDPTYSYTL  240
YHREGSNPNC LHDPSHHGGE NDPLSSRKGV IPDPCSSVSA GFKLDPHHPS ILKDDTPTLP  300
VGLPANFASA NGPKDHIRIA PTQQQSQLAS SSLQKQFYSH SVIDNEFQAQ MRNGRPRMDA  360
KARSQLLPRY WPRITDQELQ HLSGEYPKNS TSNSVITPLF EKMLSASDAG RIGRLVLPKK  420
CAEAYFPPIS QPEGLPLKVQ DASGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD  480
TVTFSRLDPE GKLVMGFRKA TNLSAEQEQP TKPANSVPTP SEVNGKVPAP DSSPNSAVPR  540
PNKVNIESKS PSPVEQAAAG KMDKGGLAQK EGPGTARSSP GPVKRKAASV GPKIKRFRMD  600
NEESMELKIT WEEAQELLRP PLKAPSIVIV DGHEFEEYEE PPILGRRTYF VTNQSGENHQ  660
WAQCEDCSKW RKMPVDALLP SKWTCSDNKW DPERTSCAFA QEISMEELAE LIPIKAGAAK  720
KSKAKIEADS IEVSDGLGTL ANLAILGEGE SLPSQPTTRH PRHRPGCSCI VCIQPPSGKG  780
PKHKQTCTCN VCMTVRRRFR TLMLRREKRQ SVKDSEAPRR KEPGQSSESI PQTASGQPPA  840
STSTNNSTQK ADKNADGPED MAVEHRMTSS PIKNQIDLNI QPEREDEQSP KSDAVGAMRL  900
LLDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-623725021125B3 domain-containing transcription repressor VAL1
5yzz_C2e-623725021125B3 domain-containing transcription repressor VAL1
5z00_C2e-623725021125B3 domain-containing transcription repressor VAL1
5z00_G2e-623725021125B3 domain-containing transcription repressor VAL1
5z00_K2e-623725021125B3 domain-containing transcription repressor VAL1
5z00_M2e-623725021125B3 domain-containing transcription repressor VAL1
6j9a_A2e-623725022126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000198G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658693.10.0PREDICTED: B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D3GSF70.0A0A0D3GSF7_9ORYZ; Uncharacterized protein
STRINGOBART07G18780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-148HSI2-like 1