PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000206G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 561aa    MW: 59322.4 Da    PI: 6.1221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000206G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32223280260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK++kgse+prsYY+C++agCp+kkkver   d++v+ei+Y+g+Hnh+k
  PH01000206G0250 223 DDGYNWRKYGQKQMKGSENPRSYYKCSFAGCPTKKKVERLP-DGQVTEIVYKGTHNHPK 280
                      8****************************************.***************85 PP
2WRKY103.31.3e-32382440159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k ver+++d ++v++tYeg+Hnh+
  PH01000206G0250 382 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKLVERASHDLRAVITTYEGKHNHD 440
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-29214281IPR003657WRKY domain
SuperFamilySSF1182904.58E-25218281IPR003657WRKY domain
SMARTSM007747.6E-35222280IPR003657WRKY domain
PROSITE profilePS5081123.72223281IPR003657WRKY domain
PfamPF031063.1E-25223279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-36367442IPR003657WRKY domain
SuperFamilySSF1182904.84E-29374442IPR003657WRKY domain
PROSITE profilePS5081137.447377442IPR003657WRKY domain
SMARTSM007748.6E-38382441IPR003657WRKY domain
PfamPF031063.2E-25383440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MTSAPGSLGA LANSGPVALT FGTNSFANLM SGSASSGAAC GGTGVSKFKA MAPSSLPLSL  60
PPASPSACFS TPSGFLDSPI LLIPSLFPSP TTGAFPSQPF NWMGTPENLQ GGVKDEQRQY  120
SDFTFQTTMT GATTTAASSF LHSSVLMAPL GGDSYNGEQH QTWSYQEQSM DAATRPAEFA  180
APFEATSSGI TAVTAAPDML VNGGYNSMSG AGFREQQSRR PSDDGYNWRK YGQKQMKGSE  240
NPRSYYKCSF AGCPTKKKVE RLPDGQVTEI VYKGTHNHPK PQNARRGSGS APYALQGAND  300
ALSGTPVATP ENSSASYGDD EINGVSSPLV GNVGGGEEFD DDEPDSKKWR KDGDGEGISL  360
AGNRTVREPR VVVQTMSDID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT VGCPVRKLVE  420
RASHDLRAVI TTYEGKHNHD VPAARGSATL YRATPPAGKA CTRPTAPAAS YLHGSGGGYS  480
GDLRPDWFGA VQQGAFGGLD GGAPTQPADG GFALSGFDNP MGTSYSYTSQ QQQQNDAMYY  540
ASSTKDEPRD DIFFEQSLLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34223443878Probable WRKY transcription factor 4
2lex_A3e-34223443878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000206G0250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769251e-131AY676925.1 Oryza sativa (indica cultivar-group) transcription factor WRKY24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809961.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-166WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A3L6RDQ60.0A0A3L6RDQ6_PANMI; Putative WRKY transcription factor 25
STRINGPavir.J03800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.14e-94WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]