PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000211G0910

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 301aa MW: 33177.9 Da PI: 10.3228

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000211G0910	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.2	4.5e-29	19	71	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt+eL ++Fv+a++ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR PH01000211G0910 19 PRLRWTTELQHSFVRAIDCLGGQDKATPKLILQLMDVRGLTISHVKSHLQMYR 71 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-28	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.073	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.74E-14	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-22	19	71	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-6	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGSGGRKGAA RQYNRSKVPR LRWTTELQHS FVRAIDCLGG QDKATPKLIL QLMDVRGLTI 60 SHVKSHLQMY RGTRQDSGKK EMQPQLHLKK HSFAIDERGH KEFMWPPMKR AKARTEVAAT 120 YKSMQGSSDM RTPGNQYCID DYTQLQAMSM DRRRVNEGLR RQRDTAAGAR AAAAAANLQA 180 LGFWVQGSEP FKVHQVSKPK AHHLNPVARQ LSSKEKYESR CCMFASATRD EPGDLGKKCS 240 PSLSLAIDQK AVNALSCWRS ESSCVLSPSS MSSSDCSGPP GCSFVGQRVN LDLSLSICGS 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-16	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000211G0910

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624520.1	1e-129	uncharacterized protein LOC107276067
TrEMBL	A0A0D3F8R7	1e-127	A0A0D3F8R7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YWA7	1e-127	A0A0D9YWA7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0NJ28	1e-127	A0A0E0NJ28_ORYRU; Uncharacterized protein
TrEMBL	B9F1L4	1e-127	B9F1L4_ORYSJ; Uncharacterized protein
STRING	OGLUM02G28020.1	1e-128	(Oryza glumipatula)
STRING	ORUFI02G28930.1	1e-128	(Oryza rufipogon)
STRING	OBART02G27470.1	1e-128	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-29	G2-like family protein