PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000211G1040

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 177aa MW: 20293.3 Da PI: 10.2797

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000211G1040	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3e-06	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H PH01000211G1040 26 FVCEVCNKGFQREQNLQLHRRGH 48 89*******************88 PP
2	zf-C2H2	13.7	0.00019	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + PH01000211G1040 103 WKCDKCSKRYAVQSDWKAHSKIC 125 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.54E-8	25	48	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-6	25	48	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.1E-6	26	48	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	26	48	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	26	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.7E-5	90	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.54E-8	98	123	No hit	No description
SMART	SM00355	140	103	123	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAYMYADPDA EVIALSPKTL LATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPA 60 QVQRRRVYLC PEPTCVHHDP ARALGDLTGV KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA 120 HSKICGTREY RCDCGTLFSR ASQARFTAFN FLGYTSTPSR PSSHLFTVHM GATFRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-21	99	140	3	44	Zinc finger protein JACKDAW
5b3h_F	1e-21	99	140	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000211G1040

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY754864	0.0	AY754864.1 Zea mays INDETERMINATE-related protein 10 mRNA, complete cds.
GenBank	BT041800	0.0	BT041800.1 Zea mays full-length cDNA clone ZM_BFb0057K19 mRNA, complete cds.
GenBank	BT054258	0.0	BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647668.1	6e-96	PREDICTED: protein indeterminate-domain 4, chloroplastic-like
Refseq	XP_015688820.1	6e-96	PREDICTED: protein indeterminate-domain 4, chloroplastic-like
Swissprot	Q8RWX7	5e-86	IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
Swissprot	Q9SCQ6	3e-86	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A0D3FZ12	4e-97	A0A0D3FZ12_9ORYZ; Uncharacterized protein
TrEMBL	A0A0P0WDK4	6e-96	A0A0P0WDK4_ORYSJ; Os04g0566400 protein
TrEMBL	B8AT33	8e-96	B8AT33_ORYSI; Uncharacterized protein
TrEMBL	Q7XUI7	8e-98	Q7XUI7_ORYSJ; OSJNBa0005N02.2 protein
STRING	OS04T0566400-02	1e-96	(Oryza sativa)
STRING	OBART04G21910.1	7e-98	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-88	indeterminate(ID)-domain 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]