PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000212G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 292aa    MW: 31397.8 Da    PI: 7.5878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000212G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.18.8e-19252288237
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+
  PH01000212G0380 252 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtACPVRKQ 288
                      7***************************99******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-19236288IPR003657WRKY domain
SuperFamilySSF1182906.93E-17244288IPR003657WRKY domain
PROSITE profilePS5081119.118246291IPR003657WRKY domain
SMARTSM007747.9E-11251291IPR003657WRKY domain
PfamPF031062.3E-15253288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGDMVPKQGR HEEEEEVIMA EHGRLGFGRE IKEVDFFSRG SGSGGGDGAA GDGDGDGRRV  60
EGGLGRRDSV NTALDLLTTA RCAVNGGEGM AGAADDHKKV DAAAVEGELR QAGEENRRLR  120
RRMLEELTRS YGALYHQLIQ ATQQQQHATT DHNPHIHHQT STPNSMQPAA MPGLQFMDTR  180
PSPAMRAAFD SGRANSADGG ADDAAGKKKP IHQEGTSTPE RGENGEQAPT AEMPCRKARV  240
SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TACPVRKQSN P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000212G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0934901e-35AC093490.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1127_B08, complete sequence.
GenBankAP0149611e-35AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-35CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699836.19e-69probable WRKY transcription factor 47
TrEMBLA0A368QBQ32e-67A0A368QBQ3_SETIT; Uncharacterized protein
STRINGPavir.J02788.1.p6e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-33WRKY family protein