PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000216G1300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 352aa    MW: 40821.3 Da    PI: 10.7169
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000216G1300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.11.7e-531112244116
             CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                        k rwlk++e+++iL+n e++ ++++++++p+sgs++L+nr+++r fr+DGy+w+kkk+gkt+ E+he+LKv++ve+l+cyYah+++np fqr
  PH01000216G1300 111 AvKVRWLKPKEVLQILQNQEQFMVAHKTPQKPSSGSWFLFNRRVLRDFRNDGYEWRKKKNGKTIAEAHERLKVDNVEALNCYYAHADKNPRFQR 204
                      4588****************************************************************************************** PP

             CG-1  97 rcywlLeeelekivlvhyle 116
                      r+yw+L+ ++e+ivlvhy+e
  PH01000216G1300 205 RIYWMLDPAYEHIVLVHYRE 224
                      ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.991105231IPR005559CG-1 DNA-binding domain
SMARTSM010765.1E-63108226IPR005559CG-1 DNA-binding domain
PfamPF038593.8E-48113224IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTQMSRQKLT RNDDGHGVAQ RSTHTGAKDE SRVLGDLVEE RLRERKGENG NDTKRGRAWH  60
RYEGLKRWKE RALLVRISQV MVVAMSHRLW RGQDRSGRRA RGFDIQKLQQ AVKVRWLKPK  120
EVLQILQNQE QFMVAHKTPQ KPSSGSWFLF NRRVLRDFRN DGYEWRKKKN GKTIAEAHER  180
LKVDNVEALN CYYAHADKNP RFQRRIYWML DPAYEHIVLV HYREGSISVS SLNDSSASNQ  240
NVSASRAEAH ISPGLTSELM AGLHLCSPGS TEEVSSQIVA IKNEANNTSR SDWIQLCNQA  300
TLRKRKMQLS REDNEAALRE PKMQLSREDN SWYGFFFLIL AAILRNFSLF R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000216G1300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649554.11e-110calmodulin-binding transcription activator 4 isoform X1
RefseqXP_015649561.11e-110calmodulin-binding transcription activator 4 isoform X2
RefseqXP_015649568.11e-112calmodulin-binding transcription activator 4 isoform X3
TrEMBLA0A0D9V9P41e-111A0A0D9V9P4_9ORYZ; Uncharacterized protein
STRINGLPERR01G36780.21e-112(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15485817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.12e-51Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains