PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000219G0080

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 423aa MW: 45105.5 Da PI: 7.7052

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000219G0080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	88	147	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ PH01000219G0080 88 PDKILPCPRCNSMDTKFCYFNNYNVHQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 147 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	85	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.6E-32	90	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.779	92	146	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MGECRGGDCS IKLFGKTIPV PEAGDVAKDL QHSVSSSTES DDQESTHQDN ADPTPRPEVV 60 DAEDPAAADK SSSPQSGDAA NQEKLKKPDK ILPCPRCNSM DTKFCYFNNY NVHQPRHFCK 120 NCQRYWTAGG AMRNVPVGAG RRKNKNAVAA SHFLQRVRAA LPGDPLCGPP VKTNGTVLSF 180 GHDASALDLA EHMSHLKEKL VPIGGRAGNS GDNPSMGSCS EVSSNRDDKN QSNSNEKVTV 240 EKSANGVQHP SMNGATMWPY SCAPSPAYYT SGIAIPIYPA APAYWGCMVP GAWSLPWPVQ 300 SQSPALSSPT SAPSVSSGPN YLTLGKHPRE GDEGRIHGNG KVWVPKTIRI DNADEVARSS 360 IWSLIGIKGD KEETATGGHK LATVFEPKCE PKMAKHTVIT SLPLLHANPV ALTRSVTFQE 420 GS*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MGECRGGDCS IKLFGKTIPV PEAGDVAKDL QHSVSSSTES DDQESTHQDN ADPTPRPEVV  60
DAEDPAAADK SSSPQSGDAA NQEKLKKPDK ILPCPRCNSM DTKFCYFNNY NVHQPRHFCK  120
NCQRYWTAGG AMRNVPVGAG RRKNKNAVAA SHFLQRVRAA LPGDPLCGPP VKTNGTVLSF  180
GHDASALDLA EHMSHLKEKL VPIGGRAGNS GDNPSMGSCS EVSSNRDDKN QSNSNEKVTV  240
EKSANGVQHP SMNGATMWPY SCAPSPAYYT SGIAIPIYPA APAYWGCMVP GAWSLPWPVQ  300
SQSPALSSPT SAPSVSSGPN YLTLGKHPRE GDEGRIHGNG KVWVPKTIRI DNADEVARSS  360
IWSLIGIKGD KEETATGGHK LATVFEPKCE PKMAKHTVIT SLPLLHANPV ALTRSVTFQE  420
GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000219G0080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956784	7e-91	EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573898.1	0.0	cyclic dof factor 1
TrEMBL	A0A1D8F0I7	0.0	A0A1D8F0I7_9POAL; Dof protein
STRING	BRADI3G25670.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-55	cycling DOF factor 2