PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000222G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 751aa    MW: 83004.9 Da    PI: 6.5139
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000222G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.4e-24127227198
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g l++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  PH01000222G0180 127 FCKTLTASDTSTHGGLSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 217
                      99*****************************7556666.59************************************************..449 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      ++el+v+v+r
  PH01000222G0180 218 NGELRVGVRR 227
                      999*****97 PP
2Auxin_resp99.16.4e-33253338183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+k+svGmRfkm+fe+++++err+sGt++g      + ++ W +S W+sLk
  PH01000222G0180 253 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQKISVGMRFKMKFEGDEAPERRFSGTIIGSGStptMPTSAWADSDWKSLK 338
                      789*************************************************************986511156679********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-42119242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-42123256IPR015300DNA-binding pseudobarrel domain
CDDcd100178.87E-23125227No hitNo description
PfamPF023621.3E-21127227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857127229IPR003340B3 DNA binding domain
SMARTSM010191.0E-21127229IPR003340B3 DNA binding domain
PfamPF065073.1E-31253338IPR010525Auxin response factor
PfamPF023094.2E-13545639IPR033389AUX/IAA domain
PROSITE profilePS5174526.029548641IPR000270PB1 domain
SuperFamilySSF542774.97E-11551626No hitNo description
PROSITE profilePS5018110.266663709IPR001810F-box domain
SuperFamilySSF813831.83E-11668715IPR001810F-box domain
PfamPF006462.4E-8668706IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.4E-7668703No hitNo description
SMARTSM002567.2E-9669709IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAAAMQMANP GAAAGSGTCS DALFRELWHA CAGPLVTVPR QGERVYYFPQ GHMEQLEAST  60
NQQLDQYLPV FNLPSKILCS VVNVELQAEA DSDEVYAQIM LQPEAGPSEL TSPDPEPQEL  120
ERCTHSFCKT LTASDTSTHG GLSVLRRHAE ECLPQLDMSQ NPPCQELVAK DLHGTEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRLMR QVNTMPSSVI  240
SSHNMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFVVSV NKYLEAKKQK ISVGMRFKMK  300
FEGDEAPERR FSGTIIGSGS TPTMPTSAWA DSDWKSLKVQ WDEPSSILRP DRVSPWELEP  360
LDATNPQPPQ PPLRNKRARP PASPCMVQER PPSFGPWKSP AEPTQPLSFS EPQQARELFP  420
SVPTSIFSAS SNAGFNSKNE PSIISNQFYW SVRDSRADSY AAGTNKVTVE RKQEPTTAGC  480
RLFGIELSSA VEETLPVVTV SGVGYDQTAV SIDVDSDRLS QPSDVNISDA LAASSERSLL  540
ETQSRQVRSC TKVIMKGMAV GRAVDLTKLG GYGDLHHKLE EMFDTQGELC STLKRWQVVY  600
TDDEDDMMLV GDDPWDEFCS MVKRIYIYSY EEAKQLAPRA KLPVIGDTIK QSAATPVAMD  660
PNGSAGVDLP NDVLVEILGR LPGRSLAEFR GVCRAWRDLV DAHDLLRPHF FPRAFPGIFT  720
NNMGSSRDPS SPRRPPEVNR LAFVRKRGAC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053631357Auxin response factor 1
4ldw_A0.053631357Auxin response factor 1
4ldw_B0.053631357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000222G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649250.0AK064925.1 Oryza sativa Japonica Group cDNA clone:J013000N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636800.10.0auxin response factor 9 isoform X3
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A0E0KQZ50.0A0A0E0KQZ5_ORYPU; Auxin response factor
STRINGOPUNC04G11520.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]