PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000229G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 1228aa    MW: 136093 Da    PI: 9.5484
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000229G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008811341156323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       Cp   Cgk F ++ +L +H ++H
  PH01000229G0090 1134 CPvkGCGKKFFSHKYLLQHRKVH 1156
                       9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.1E-152667IPR003349JmjN domain
PROSITE profilePS5118313.7862768IPR003349JmjN domain
PfamPF023751.9E-132861IPR003349JmjN domain
SuperFamilySSF511971.07E-13148308No hitNo description
SMARTSM005585.6E-17190310IPR003347JmjC domain
PROSITE profilePS5118417.95193350IPR003347JmjC domain
PfamPF023732.3E-15223274IPR003347JmjC domain
Gene3DG3DSA:3.30.160.603.5E-511011131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551411091131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61211321161IPR007087Zinc finger, C2H2
SMARTSM003550.6211321156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-611341155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011341156IPR007087Zinc finger, C2H2
SuperFamilySSF576676.38E-911481190No hitNo description
Gene3DG3DSA:3.30.160.602.6E-811561183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.86611621191IPR007087Zinc finger, C2H2
SMARTSM003550.01911621186IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011641186IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-711801214No hitNo description
Gene3DG3DSA:3.30.160.608.7E-811841215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.42911921223IPR007087Zinc finger, C2H2
SMARTSM00355311921218IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011941218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1228 aa     Download sequence    Send to blast
MRSSPPPPAP GAAAELVPPW LKSLPLAPEF HPTAAEFADP IAYILKIEPA AASFGICKVV  60
PPCPPPPKKA TLSNLSRSFA ALHPDDPAPS FPTRHQQLGL CPRRARPALK PVWRSSHRYT  120
LPQFETKAAA SRKSLLARLN VPASKHLSPL DLEALFSRAS ADRPVVVEYA SDMPGSGFSP  180
CSRQQPAASH VGETAWNMRD VARSPGSLLR FMREEVPGVT TPMLYVAMMF SWFAWHVEDH  240
DLHSLNYMHF GGPKTWYGVP RDAALAFEEV VRVHGYGGEV NPLGFNCAEA SNIATPEWLR  300
VAKEAAIRRA SINHPPMVSH YQLLYELALS MCFREPSIGA MEPRSSRLKE KKKGEGGQLV  360
KKIFVRNVIE DNELLSCLLY DGSSCIILPT NAQDGPVLSA LRSRSQPKAK SRISDGLCSS  420
GEALEALGCL PLNGTLDRNG EIRNCSALSS SKESSLSVCS GKNFPPTTCM GDRVNMSSSS  480
HTHNAEGDKG DIISASGLLD QGLLSWSHLA DALRSERTNG GILRSGFELY GNEIISDAAP  540
FNRNSALDLL ASAYGDQSDS DEDIRNKKIQ VSHDSSELSR HMTESLANSS SNVCFYGTKA  600
PSSSKDCQQR SSSQSFQCIG SSDMLNGPRG VRTRNKYQLK MVLSEGFQAK NMYSVMEKKV  660
QSEPSSSKKS LKEPLDVSGT DYDANCNSTA ISMGDPISST TTMNNLNVSI LKSDTDSSRM  720
HVFCLEHAIE VGKQLQAIGG AHIILLCHPE YPKIEAEARS LAAEMDVEYD WKDIHFREAS  780
MEDRETIQEI LRDGEAIPTN SDWAVKLGIN LYYSANLAKS PLYSKQMPYN RIIYRAFGCN  840
SPSNSPVKLK TYERIQGRQK KIVLAGRWCG KVWMSNQVHP YLAHRIESRE EEETDGIGSY  900
RLDQKPKVEP VDNSSRVAAS KRNSSTSIAV TKSSKKRENK PLENKNTKRP KHTEEDNSKV  960
LKGAAEVPSP SPAGMVLRSS SRIANRENKL KSKMEEEDDG LASRPKSKVK EDNDSPASHS  1020
RARPLKHKTK VEAKKQMNKT RGEKRRAPTA PKDEEEHPSA IEGCSMSSDT KQELSLHKPR  1080
MRAEAKKQVK KARGEKRKTP RAPKQEEEYA CNIEGCSMSF GTKQELSLHK RDICPVKGCG  1140
KKFFSHKYLL QHRKVHTDDR PLKCPWKGCV MAFKWPWART EHLRVHTGDR PYVCHETGCA  1200
QTFRFVSDFS RHKRKTGHST KKTKAKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-611109122323137Lysine-specific demethylase REF6
6a58_A2e-611109122323137Lysine-specific demethylase REF6
6a59_A2e-611109122323137Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000229G0090
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232711.20.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A3L6SIW80.0A0A3L6SIW8_PANMI; Uncharacterized protein
STRINGBRADI2G58130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-117relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]