PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000241G1400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 371aa    MW: 41031.9 Da    PI: 10.2137
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000241G1400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-09534130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +++WT eE+e l ++v ++G g W+tI + 
  PH01000241G1400  5 KQKWTSEEEEALRRGVLKHGAGKWRTIQKD 34
                     79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.989158IPR017930Myb domain
SuperFamilySSF466896.16E-12280IPR009057Homeodomain-like
SMARTSM007175.8E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10551IPR009057Homeodomain-like
PfamPF002493.5E-6533IPR001005SANT/Myb domain
CDDcd116601.03E-14683No hitNo description
SMARTSM005266.3E-9187252IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.754189257IPR005818Linker histone H1/H5, domain H15
PfamPF005388.1E-8193249IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.8E-13193266IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-11193263IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK IQYMDKLVDS  60
SFPRLSKWEK LCIAGPVDKW RNLSFSASGL GSRDKIRVPK IKGPSSSPSP SSQALLLPAP  120
NKVAEALPPA DSEKSPQSQD GKTPKLASLY FHTEVQFIKL IRNMILANDC KMIFTPVGMT  180
MIKISDMKLR SWYSFMILEA LSELKDPNGS DVAAICNFIE QRHEVQPNFR RLLGAKLRRL  240
MGAKKIEKID KAYRLTDSYA TKASAPIKTP TPKQKDPAKP LKVKASQNLG LLSAVSPALD  300
AAAAAAVKVA DAEAKANLAN EHMIEAERIL KVAEQTESLL TLATEIYERC IPMSILQHFT  360
FHLPIIFSVI *
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000241G1400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945240.0FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622156.11e-116single myb histone 4 isoform X1
SwissprotQ6WLH41e-106SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0A9PJS41e-121A0A0A9PJS4_ARUDO; Smh4
STRINGOPUNC01G28080.11e-116(Oryza punctata)
STRINGORGLA01G0233700.11e-116(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-24telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]